Skip to content
Experiments for the Vargas paper (software at https://github.com/langmead-lab/vargas)
Shell Python
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
heuristic_experiments
optimization_experiments
scaling_experiments
small_test
LICENSE
README.md

README.md

vargas-experiments

small_test

Small test dataset for testing Vargas

Scaling Experiments (Section 3.1)

Generating graphs and read sets to test thread scaling on Knights Landing and Skylake architectures with SSE4.1, AVX2, and AVX512BW instruction sets

Heuristic Experiments (Section 3.2-3.3)

Aligning reads with the scoring function of popular aligners to evaluate alignment correctness and mapping quality

Optimization Experiments (Section 4)

Optimizing Bowtie 2 parameters for aligning a dataset of ChIP-seq reads.

You can’t perform that action at this time.