Added Not_Reported and week 11 data

cdcepi · 092ef7438b15372bd4878346411bc03d0dee90fd · aashanand committed Mar 27, 2016 · Mar 27, 2016 · 092ef74
1 parent 87f2c8d
commit 092ef7438b15372bd4878346411bc03d0dee90fd
diff --git a/.gitignore b/.gitignore
@@ -23,3 +23,5 @@ vignettes/*.pdf
 # html files
 *.html
 
+.DS_Store
+
diff --git a/Florida/FDH_Arbovirus/data/FDH_Arbovirus-2016-01-16 b/Florida/FDH_Arbovirus/data/FDH_Arbovirus-2016-01-16
@@ -1,17 +1,17 @@
 "","location","report_date","data_field","data_field_code","time_period","time_period_type","value","unit"
-"1","United_States-Florida-Alachua_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"2","United_States-Florida-Baker_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"3","United_States-Florida-Bay_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"4","United_States-Florida-Bradford_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"5","United_States-Florida-Brevard_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"6","United_States-Florida-Broward_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"7","United_States-Florida-Calhoun_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"8","United_States-Florida-Charlotte_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"9","United_States-Florida-Citrus_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"10","United_States-Florida-Clay_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"11","United_States-Florida-Collier_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"12","United_States-Florida-Columbia_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"13","United_States-Florida-Miami-Dade_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,1,"cases"
+"1","United_States-Florida",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,3,"cases"
+"2","United_States-Florida-Alachua_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"3","United_States-Florida-Baker_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"4","United_States-Florida-Bay_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"5","United_States-Florida-Bradford_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"6","United_States-Florida-Brevard_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"7","United_States-Florida-Broward_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"8","United_States-Florida-Calhoun_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"9","United_States-Florida-Charlotte_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"10","United_States-Florida-Citrus_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"11","United_States-Florida-Clay_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"12","United_States-Florida-Collier_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"13","United_States-Florida-Columbia_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "14","United_States-Florida-DeSoto_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "15","United_States-Florida-Dixie_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "16","United_States-Florida-Duval_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
@@ -42,28 +42,29 @@
 "41","United_States-Florida-Manatee_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "42","United_States-Florida-Marion_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "43","United_States-Florida-Martin_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"44","United_States-Florida-Monroe_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"45","United_States-Florida-Nassau_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"46","United_States-Florida-Okaloosa_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"47","United_States-Florida-Okeechobee_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"48","United_States-Florida-Orange_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"49","United_States-Florida-Osceola_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"50","United_States-Florida-Palm Beach_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"51","United_States-Florida-Pasco_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"52","United_States-Florida-Pinellas_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"53","United_States-Florida-Polk_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"54","United_States-Florida-Putnam_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"55","United_States-Florida-St Johns_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"56","United_States-Florida-St Lucie_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"44","United_States-Florida-Miami-Dade_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,1,"cases"
+"45","United_States-Florida-Monroe_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"46","United_States-Florida-Nassau_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"47","United_States-Florida-Not_Reported",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"48","United_States-Florida-Okaloosa_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"49","United_States-Florida-Okeechobee_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"50","United_States-Florida-Orange_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"51","United_States-Florida-Osceola_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"52","United_States-Florida-Palm Beach_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"53","United_States-Florida-Pasco_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"54","United_States-Florida-Pinellas_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"55","United_States-Florida-Polk_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"56","United_States-Florida-Putnam_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "57","United_States-Florida-Santa Rosa_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "58","United_States-Florida-Sarasota_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "59","United_States-Florida-Seminole_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"60","United_States-Florida-Sumter_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"61","United_States-Florida-Suwannee_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"62","United_States-Florida-Taylor_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"63","United_States-Florida-Union_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"64","United_States-Florida-Volusia_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"65","United_States-Florida-Wakulla_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"66","United_States-Florida-Walton_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"67","United_States-Florida-Washington_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"68","United_States-Florida",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,3,"cases"
+"60","United_States-Florida-St Johns_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"61","United_States-Florida-St Lucie_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"62","United_States-Florida-Sumter_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"63","United_States-Florida-Suwannee_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"64","United_States-Florida-Taylor_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"65","United_States-Florida-Union_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"66","United_States-Florida-Volusia_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"67","United_States-Florida-Wakulla_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"68","United_States-Florida-Walton_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"69","United_States-Florida-Washington_County",2016-01-16,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
diff --git a/Florida/FDH_Arbovirus/data/FDH_Arbovirus-2016-01-23 b/Florida/FDH_Arbovirus/data/FDH_Arbovirus-2016-01-23
@@ -1,17 +1,17 @@
 "","location","report_date","data_field","data_field_code","time_period","time_period_type","value","unit"
-"1","United_States-Florida-Alachua_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"2","United_States-Florida-Baker_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"3","United_States-Florida-Bay_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"4","United_States-Florida-Bradford_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"5","United_States-Florida-Brevard_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"6","United_States-Florida-Broward_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"7","United_States-Florida-Calhoun_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"8","United_States-Florida-Charlotte_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"9","United_States-Florida-Citrus_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"10","United_States-Florida-Clay_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"11","United_States-Florida-Collier_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"12","United_States-Florida-Columbia_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"13","United_States-Florida-Miami-Dade_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,1,"cases"
+"1","United_States-Florida",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,3,"cases"
+"2","United_States-Florida-Alachua_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"3","United_States-Florida-Baker_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"4","United_States-Florida-Bay_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"5","United_States-Florida-Bradford_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"6","United_States-Florida-Brevard_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"7","United_States-Florida-Broward_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"8","United_States-Florida-Calhoun_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"9","United_States-Florida-Charlotte_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"10","United_States-Florida-Citrus_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"11","United_States-Florida-Clay_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"12","United_States-Florida-Collier_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"13","United_States-Florida-Columbia_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "14","United_States-Florida-DeSoto_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "15","United_States-Florida-Dixie_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "16","United_States-Florida-Duval_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
@@ -42,28 +42,29 @@
 "41","United_States-Florida-Manatee_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "42","United_States-Florida-Marion_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "43","United_States-Florida-Martin_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"44","United_States-Florida-Monroe_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"45","United_States-Florida-Nassau_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"46","United_States-Florida-Okaloosa_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"47","United_States-Florida-Okeechobee_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"48","United_States-Florida-Orange_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"49","United_States-Florida-Osceola_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"50","United_States-Florida-Palm Beach_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"51","United_States-Florida-Pasco_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"52","United_States-Florida-Pinellas_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"53","United_States-Florida-Polk_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"54","United_States-Florida-Putnam_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"55","United_States-Florida-St Johns_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"56","United_States-Florida-St Lucie_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"44","United_States-Florida-Miami-Dade_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,1,"cases"
+"45","United_States-Florida-Monroe_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"46","United_States-Florida-Nassau_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"47","United_States-Florida-Not_Reported",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"48","United_States-Florida-Okaloosa_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"49","United_States-Florida-Okeechobee_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"50","United_States-Florida-Orange_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"51","United_States-Florida-Osceola_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"52","United_States-Florida-Palm Beach_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"53","United_States-Florida-Pasco_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"54","United_States-Florida-Pinellas_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"55","United_States-Florida-Polk_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"56","United_States-Florida-Putnam_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "57","United_States-Florida-Santa Rosa_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "58","United_States-Florida-Sarasota_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
 "59","United_States-Florida-Seminole_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"60","United_States-Florida-Sumter_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"61","United_States-Florida-Suwannee_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"62","United_States-Florida-Taylor_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"63","United_States-Florida-Union_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"64","United_States-Florida-Volusia_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"65","United_States-Florida-Wakulla_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"66","United_States-Florida-Walton_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"67","United_States-Florida-Washington_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
-"68","United_States-Florida",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,3,"cases"
+"60","United_States-Florida-St Johns_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"61","United_States-Florida-St Lucie_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"62","United_States-Florida-Sumter_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"63","United_States-Florida-Suwannee_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"64","United_States-Florida-Taylor_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"65","United_States-Florida-Union_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"66","United_States-Florida-Volusia_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"67","United_States-Florida-Wakulla_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"68","United_States-Florida-Walton_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"
+"69","United_States-Florida-Washington_County",2016-01-23,"yearly_reported_travel_cases","FL0001",NA,NA,0,"cases"