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| # post-factum corrections to the underlying ontologies | |
| @prefix bao: <http://www.bioassayontology.org/bao#> . | |
| @prefix bat: <http://www.bioassayontology.org/bat#> . | |
| @prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . | |
| @prefix xsd: <http://www.w3.org/2001/XMLSchema#> . | |
| @prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> . | |
| @prefix owl: <http://www.w3.org/2002/07/owl#> . | |
| @prefix obo: <http://purl.obolibrary.org/obo/> . | |
| # the 'bat:preferredParent' indicates that when two 'owl:equivalentClass' terms could be placed analogously | |
| # in a hierarchy, the preferred one is used as the branch master; this occurs frequently when the BAO borrows | |
| # terms from other ontologies (such as GO), which can get a bit messy | |
| # biological process | |
| obo:GO_0008150 a bat:preferredParent . | |
| obo:GO_0008150 bat:finalLabel "biological process" . | |
| # cellular component | |
| obo:GO_0005575 a bat:preferredParent . | |
| obo:GO_0005575 bat:finalLabel "cellular component" . | |
| # molecular function | |
| obo:GO_0003674 a bat:preferredParent . | |
| obo:GO_0003674 bat:finalLabel "molecular function" . | |
| # disease | |
| obo:DOID_4 a bat:preferredParent . | |
| # cell line cell | |
| obo:CLO_0000001 a bat:preferredParent . | |
| obo:CLO_0000001 owl:equivalentClass bao:BAO_0002931 . | |
| # fluorescence intensity stays in physical detection branch | |
| # (shouldn't need this, but here it is just in case) | |
| #bao:BAO_0000363 bat:notSubClass bao:BAO_0000583 . | |
| #bao:BAO_0000363 rdfs:subClassOf bao:BAO_0000046 . | |
| # use the original UO units | |
| bao:BAO_0000077 a bat:eliminated . | |
| obo:UO_0000000 a bat:preferredParent . | |
| # subclass breaking: the 'notSubClass' directive overrides a subclass that has been specified in one of the | |
| # source ontologies, i.e. makes it as if it were not so, regardless of the order in which the ontologies were | |
| # processed | |
| # molecular function: subclassed from a weird singleton, for no apparent reason | |
| # (but: it's rather difficult to disentangle because the BAO is rewriting a lot of it) | |
| #obo:GO_0003674 rdfs:subClassOf bao:BAO_0003114 . | |
| #obo:GO_0003674 bat:notSubClass bao:BAO_0003117 . | |
| #bao:BAO_0003075 bat:notSubClass bao:BAO_0003117 . | |
| #bao:BAO_0003117 bat:notSubClass bao:BAO_0003114 . |