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Researching 'em microbes...
👨‍🔬
Researching 'em microbes...

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  • 6 discussions answered

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@opencobra @resendislab @PythonDayMX @Gibbons-Lab
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  1. R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

    R 16 7

  2. Python package to study microbial communities using metabolic modeling.

    Python 35 10

  3. COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 287 177

  4. An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

    Python 15 7

  5. 1
    import sys; from PIL import Image; import numpy as np
    2
    
                  
    3
    chars = np.asarray(list(' .,:;irsXA253hMHGS#9B&@'))
    4
    
                  
    5
    if len(sys.argv) != 4: print( 'Usage: ./asciinator.py image scale factor' ); sys.exit()
  6. Materials and tutorials for the 2020 ISB Microbiome Course

    Jupyter Notebook 17 12

962 contributions in the last year

Aug Sep Oct Nov Dec Jan Feb Mar Apr May Jun Jul Mon Wed Fri

Contribution activity

July 2021

Reviewed 3 pull requests in 3 repositories
opencobra/cobrapy 1 pull request
micom-dev/micom 1 pull request
conda-forge/swiglpk-feedstock 1 pull request
Answered 1 discussion in 1 repository

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