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R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.
Python package to study microbial communities using metabolic modeling.
COBRApy is a package for constraint-based modeling of metabolic networks.
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
import sys; from PIL import Image; import numpy as np
chars = np.asarray(list(' .,:;irsXA253hMHGS#9B&@'))
if len(sys.argv) != 4: print( 'Usage: ./asciinator.py image scale factor' ); sys.exit()
Materials and tutorials for the 2020 ISB Microbiome Course
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