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Researching 'em microbes...
Researching 'em microbes...


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@opencobra @resendislab @PythonDayMX
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Hi there 👋. I'm a microbial ecologist studying the human gut microbiome. 🦠+💻 = 💓

Our lab GitHub can be found here.

Most of my work takes place in other Github organizations.

micom-dev  openCobra  gibbons-lab  gibbons-lab 


twitter  twitter  twitter 


orcid  Google Scholar 


Python R Go CSS JavaScript C Rust

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  1. Gibbons-Lab/mbtools Gibbons-Lab/mbtools Public

    R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.

    R 20 9

  2. micom-dev/micom micom-dev/micom Public

    Python package to study microbial communities using metabolic modeling.

    Python 83 17

  3. opencobra/cobrapy opencobra/cobrapy Public

    COBRApy is a package for constraint-based modeling of metabolic networks.

    Python 455 212

  4. resendislab/corda resendislab/corda Public

    An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al

    Python 22 8

  5. Convert image to ascii art Convert image to ascii art
    import sys; from PIL import Image; import numpy as np
    chars = np.asarray(list(' .,:;irsXA253hMHGS#9B&@'))
    if len(sys.argv) != 4: print( 'Usage: ./ image scale factor' ); sys.exit()
  6. Gibbons-Lab/isb_course_2022 Gibbons-Lab/isb_course_2022 Public

    Materials and presentation for the 2022 ISB Microbiome course.

    Jupyter Notebook 25 9