multifil - a simulation of a half sarcomere
To install, in the top level directory of a local copy of this repository:
pip install -e .to install a symlinked copy that can be updated with a
- or run
pip install .to install a local copy that isn't symlinked. I recommend the former as this model is in heavy flux and so you'll probably want recent changes directly from the repo.
Starting a run
The simplest run would be:
import multifil sarc = multifil.hs.hs() axial_force = sarc.run()
More complicated runs (workloops, length-velocity calculations) require the modification of sarcomere parameters such as z-line-to-m-line distance and Calcium activation during the run. This is managed by the
aws.run.py module through the reading of JSON formatted meta files. The metafiles are specified in the same.