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Matlab framework for extracting migration data out of microscopical video sequences showing living cells.
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README.md
setPathMigrationAnalysis.m
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README.md

matlabMigrationAnalysis

Matlab framework for extracting migration data out of microscopical video sequences showing living cells.

This repository bases on our validated cell tracking algorithm published in [1]. The matlabMigrationAnalysis implements a cell tracking scheme dedicated to migration analysis.

Requirements

MATLAB and the the Image Processing Library. For batch processing, the Parallel processing toolbox is usefull but not required.

Getting started

  1. clone the repository
  2. Start MATLAB and run the file startMigrationAnalysisGui.m

A user guide can be found in the documentation folder.

license

MIT, see LICENSE file.

References

[1] A novel validation algorithm allows for automated cell tracking and the extraction of biologically meaningful parameters, DH Rapoport*, T Becker*, AM Mamlouk, S Schicktanz, C Kruse, PloS one 6 (11), e27315

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