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DCE MR Analysis

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aditiiyer edited this page Jan 12, 2018 · 4 revisions

Non-model-based
Tofts model-based

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Toggle table of contents Pages 95

Home
access scan and label mask from planC
Auto Segmentation models
Benchmarking CERR Radiomics with other software
Building a deeplabv3 segmentation model
Building AI Models with CERR
CERR Extractor: Fusing DVH data with outcomes
CERROptions (user defined settings)
CoLlAGe
Command line tools
Comparison with Pyradiomics
Compiled version of CERR
Consensus Structure
Contouring (using reference series)
Contouring tools
Convert the output of calcGlobalRadiomicsFeatures.m to analyzable matrix format
Coordinate system
Crosslisting functions
Data Structure (The planC object)
Data structure for IMRTP
DCE MR Analysis
Deformable Image Registration (DIR)
Deploying AI models
Deriving New Structure
Directory Structure
dose volume histograms
Dosimetric models
DVH metrics in CERR
Editing Dose
Editing Scans
Editing Structures
example to obtain scan values within an roi for the patient cohort
example wrapper_function_for_radiomics_calculation
Extract patient outline
Extracting radiomics features for a patient cohort
First order (intensity) features
First order statistics
Gabor filter
GLCM_global_features
Global radiomics feature calculation parameters
GLRLM_global_features
GLSZM_global_features
Haralick texture features
Harmonizing structure names across a cohort
Higher order radiomics features
Histogram based scan metrics
Image preprocessing for deep learning based segmentation
Image Resampling
Importing Mha
Importing NIfTI data
Importing to CERR
Importing vendor specific data
IMRT optimization interfacing with an external solver
IMRTP GUI controls
Intensity volume histogram (IVH) features
Interfacing IMRT optimization with an external solver
JSON configuration for deep learning based segmentation
JSON settings for ROE
JSON settings for ROE (criteria)
JSON settings for ROE (models)
JSON settings for ROE (protocols)
Laplacian of Gaussian filter
Laws' textures
Mean filter
Measuring Background Parenchymal Enhancement (BPE) on MRI
Merging plans
NGLDM_global_features
NGTDM_global_features
Non model based analysis of DCE MRI
Optimal Mass Transport (OMT) distance
ORART Optimization example
Patch wise first order statistics
Peak and valley features
Plan Robustness Analysis
Pre processing directories for batch import
Preprocessing settings for scans
Quantize scan matrix
Radiomics
Radiomics models
Radiomics test suite
Radiotherapy Outcomes Estimator (ROE)
Reassigning Structure Color
ROE architcture
Running Singularity with Vagrant
Segment Labeler
Segmentation evaluation metrics
Shape features
sliCERR Extension for 3DSlicer
Sobel filter
Source code version of CERR
Texture calculation
Using ROE
Using SimpleITK filters
Viewer
Wavelet filter

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