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PubArray is an open sourced A swing based java application for building web applications from analized microarray data. WARRANTY DISCLAIMER AND COPYRIGHT NOTICE ======================================== The Jackson Laboratory makes no representation about the suitability or accuracy of this software for any purpose, and makes no warranties, either express or implied, including merchantability and fitness for a particular purpose or that the use of this software will not infringe any third party patents, copyrights, trademarks, or other rights. The software are provided "as is". This software is provided to enhance knowledge and encourage progress in the scientific community. This is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version." BUILDING ======== In order successfully complete these build instructions you must have: * git * ant >= 1.7.1 * java development kit (JDK) >= 1.5 To obtain and build the source code enter the following commands: git clone git://github.com/keithshep/pub-array.git cd pub-array git submodule init git submodule update ant After the build completes you will have a full JNLP distribution built under: ./modules/pub-array-builder/web-dist Assuming you have a bash shell you should also be able to run from the command-line (without bothering with a JNLP install) by doing: cd modules/pub-array-builder ./run-builder.bash The drawback to using the ./run-builder.bash script is that help screens will not be available to you since they depend on JNLP APIs to work. CONTRIBUTING ============ PubArray is open sourced and we welcome contributions. It is probably a good idea to get in contact with us if you intend to make a contribution so that we can coordinate and advise you on whether or not we think we will be able to accept the proposed changes.