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Commits on May 19, 2011
  1. this module requires Config::Any; skip these tests if Config::Any isn…

    Chris Fields authored
    …'t present
  2. this module requires Config::Any; skip these tests if Config::Any isn…

    Chris Fields authored
    …'t present
  3. don't call executable()

    Chris Fields authored
  4. @DaveMessina

    skip test count was off

    DaveMessina authored
    Signed-off-by: DaveMessina <online@davemessina.com>
  5. @DaveMessina

    Bio::DB::Sam missing from required modules list was causing test fail…

    DaveMessina authored
    …ure instead of skip
    
    Signed-off-by: DaveMessina <online@davemessina.com>
  6. @DaveMessina

    updating version numbers. Any way to have this auto-inserted via dist…

    DaveMessina authored
    …-version or similar?
    
    Signed-off-by: DaveMessina <online@davemessina.com>
Commits on May 4, 2011
  1. @DaveMessina

    updating Changes

    DaveMessina authored
Commits on May 3, 2011
  1. @DaveMessina

    adding Jessen as curator and copyright

    DaveMessina authored
    Signed-off-by: DaveMessina <online@davemessina.com>
Commits on May 2, 2011
  1. MSAProbs BioPerl-Run wrapper with test script

    Jessen Bredeson authored
Commits on Apr 21, 2011
  1. skip # off

    Chris Fields authored
  2. hack in a workaround for version(), which conflicts with the -version…

    Chris Fields authored
    … parameter for BLAST+
  3. a few last additions

    Chris Fields authored
Commits on Apr 20, 2011
  1. some more Changes

    Chris Fields authored
  2. add comment on the required BLAST+ version, refs #3213

    Chris Fields authored
  3. get SABlast tests passing with v 2.2.24+ and up

    Chris Fields authored
  4. BLAST+ tests passing so far, refs #3213

    Chris Fields authored
  5. changes to deal with indexing of FASTA with dup ID failing with lates…

    Chris Fields authored
    …t BLAST+
Commits on Apr 14, 2011
  1. get MAFFT working

    Chris Fields authored
  2. latest samtools needs a sorted BAM for indexing

    Chris Fields authored
  3. update for EMBOSS 6.2.0

    Chris Fields authored
Commits on Apr 13, 2011
  1. @hyphaltip
Commits on Apr 4, 2011
  1. Revert "test hook from run (issue might be CGI params)"

    Chris Fields authored
    This reverts commit 08f7bed.
  2. test hook from run (issue might be CGI params)

    Chris Fields authored
Commits on Apr 1, 2011
  1. Update Bowtie module for 0.12.7

    kortschak authored
  2. Update BEDTools module for v2.10.1

    kortschak authored
Commits on Mar 27, 2011
  1. @hyphaltip

    bugzilla -> redmine

    hyphaltip authored
  2. @hyphaltip

    use the 1a file -- still problem in parsing the trailing score in the…

    hyphaltip authored hyphaltip committed
    … tree file, needs to e fixed at the parser level I think
  3. @hyphaltip

    test for bug #3085

    hyphaltip authored hyphaltip committed
  4. @hyphaltip

    don't need this lib include

    hyphaltip authored hyphaltip committed
Commits on Nov 5, 2010
  1. remove cruft, gunge, and implement searchio()

    Chris Fields authored
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