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Commits on May 19, 2011
  1. this module requires Config::Any; skip these tests if Config::Any isn…

    …'t present
    Chris Fields committed May 19, 2011
  2. this module requires Config::Any; skip these tests if Config::Any isn…

    …'t present
    Chris Fields committed May 19, 2011
  3. don't call executable()

    Chris Fields committed May 19, 2011
  4. skip test count was off

    Signed-off-by: DaveMessina <online@davemessina.com>
    DaveMessina committed May 19, 2011
  5. Bio::DB::Sam missing from required modules list was causing test fail…

    …ure instead of skip
    
    Signed-off-by: DaveMessina <online@davemessina.com>
    DaveMessina committed May 19, 2011
  6. updating version numbers. Any way to have this auto-inserted via dist…

    …-version or similar?
    
    Signed-off-by: DaveMessina <online@davemessina.com>
    DaveMessina committed May 19, 2011
Commits on May 4, 2011
  1. updating Changes

    DaveMessina committed May 4, 2011
Commits on May 3, 2011
  1. adding Jessen as curator and copyright

    Signed-off-by: DaveMessina <online@davemessina.com>
    DaveMessina committed May 3, 2011
Commits on May 2, 2011
  1. MSAProbs BioPerl-Run wrapper with test script

    Jessen Bredeson committed May 2, 2011
Commits on Apr 21, 2011
  1. skip # off

    Chris Fields committed Apr 21, 2011
  2. hack in a workaround for version(), which conflicts with the -version…

    … parameter for BLAST+
    Chris Fields committed Apr 21, 2011
  3. a few last additions

    Chris Fields committed Apr 21, 2011
Commits on Apr 20, 2011
  1. some more Changes

    Chris Fields committed Apr 20, 2011
  2. add comment on the required BLAST+ version, refs #3213

    Chris Fields committed Apr 20, 2011
  3. get SABlast tests passing with v 2.2.24+ and up

    Chris Fields committed Apr 20, 2011
  4. BLAST+ tests passing so far, refs #3213

    Chris Fields committed Apr 20, 2011
  5. changes to deal with indexing of FASTA with dup ID failing with lates…

    …t BLAST+
    Chris Fields committed Apr 20, 2011
Commits on Apr 14, 2011
  1. get MAFFT working

    Chris Fields committed Apr 14, 2011
  2. latest samtools needs a sorted BAM for indexing

    Chris Fields committed Apr 14, 2011
  3. update for EMBOSS 6.2.0

    Chris Fields committed Apr 14, 2011
Commits on Apr 13, 2011
Commits on Apr 4, 2011
  1. Revert "test hook from run (issue might be CGI params)"

    This reverts commit 08f7bed.
    Chris Fields committed Apr 4, 2011
  2. test hook from run (issue might be CGI params)

    Chris Fields committed Apr 4, 2011
Commits on Apr 1, 2011
  1. Update Bowtie module for 0.12.7

    kortschak committed Apr 1, 2011
  2. Update BEDTools module for v2.10.1

    kortschak committed Apr 1, 2011
Commits on Mar 27, 2011
  1. bugzilla -> redmine

    hyphaltip committed Mar 27, 2011
  2. use the 1a file -- still problem in parsing the trailing score in the…

    … tree file, needs to e fixed at the parser level I think
    hyphaltip committed with hyphaltip Mar 27, 2011
  3. test for bug #3085

    hyphaltip committed with hyphaltip Mar 27, 2011
  4. don't need this lib include

    hyphaltip committed with hyphaltip Mar 27, 2011
Commits on Nov 5, 2010
  1. remove cruft, gunge, and implement searchio()

    Chris Fields committed Nov 5, 2010