From eb887a00b1c65f48eedef627d0695ede391b4364 Mon Sep 17 00:00:00 2001 From: Mike Lin Date: Tue, 27 Nov 2018 14:38:00 -0800 Subject: [PATCH] Update README.md --- README.md | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 479577ea..dbebb478 100644 --- a/README.md +++ b/README.md @@ -32,19 +32,20 @@ $ miniwdl check --path skylab/library/tasks/ \ SmartSeq2SingleSample.wdl workflow SmartSeq2SingleCell + (Ln 14, Col 3) UnusedDeclaration, nothing references File gtf_file call HISAT2.HISAT2PairedEnd call Picard.CollectMultipleMetrics call Picard.CollectRnaMetrics call Picard.CollectDuplicationMetrics - call HISAT2.HISAT2RSEM + call HISAT2.HISAT2RSEM as HISAT2Transcriptome call RSEM.RSEMExpression call GroupQCs.GroupQCOutputs call ZarrUtils.SmartSeq2ZarrConversion GroupQCs : GroupMetricsOutputs.wdl task GroupQCOutputs - (Ln 10, Col 3) ImpliedStringCoercion: String mem = - (Ln 11, Col 3) ImpliedStringCoercion: String cpu = - (Ln 12, Col 3) ImpliedStringCoercion: String disk_space = + (Ln 10, Col 3) StringCoercion, String mem = :Int: + (Ln 11, Col 3) StringCoercion, String cpu = :Int: + (Ln 12, Col 3) StringCoercion, String disk_space = :Int: HISAT2 : HISAT2.wdl task HISAT2PairedEnd task HISAT2RSEM