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egg skeleton

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commit ec854c447ac600650beaaeec74b797378770b103 1 parent 85ce1bb
@zupo zupo authored
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32 README.rst
@@ -1,4 +1,34 @@
sit.math
========
-Mathematics module for Sediment Isotope Tomography (SIT)
+Mathematics module for Sediment Isotope Tomography (SIT).
+
+* `Source code @ GitHub <https://github.com/chaoflow/sit.math>`_
+
+
+Install
+=======
+
+Install into your Python path using `pip` or `easy_install`::
+
+ $ pip install sit.math
+ $ easy_install sit.math
+
+
+Usage
+=====
+
+After installing it, this is how you use it::
+
+ TODO
+ >>> some python exp here showing how to use sit.math
+
+Develop
+=======
+
+#. Clone with git: ``git clone git@github.com:chaoflow/sit.math.git``.
+#. Bootstrap buildout: ``python2.6 bootstrap.py``.
+#. Run buildout: ``bin/buildout``.
+#. Use sit.math: ``bin/py`` and ``import sit.math``.
+#. Test sit.math: ``bin/test``.
+
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260 bootstrap.py
@@ -0,0 +1,260 @@
+##############################################################################
+#
+# Copyright (c) 2006 Zope Foundation and Contributors.
+# All Rights Reserved.
+#
+# This software is subject to the provisions of the Zope Public License,
+# Version 2.1 (ZPL). A copy of the ZPL should accompany this distribution.
+# THIS SOFTWARE IS PROVIDED "AS IS" AND ANY AND ALL EXPRESS OR IMPLIED
+# WARRANTIES ARE DISCLAIMED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+# WARRANTIES OF TITLE, MERCHANTABILITY, AGAINST INFRINGEMENT, AND FITNESS
+# FOR A PARTICULAR PURPOSE.
+#
+##############################################################################
+"""Bootstrap a buildout-based project
+
+Simply run this script in a directory containing a buildout.cfg.
+The script accepts buildout command-line options, so you can
+use the -c option to specify an alternate configuration file.
+"""
+
+import os, shutil, sys, tempfile, textwrap, urllib, urllib2, subprocess
+from optparse import OptionParser
+
+if sys.platform == 'win32':
+ def quote(c):
+ if ' ' in c:
+ return '"%s"' % c # work around spawn lamosity on windows
+ else:
+ return c
+else:
+ quote = str
+
+# See zc.buildout.easy_install._has_broken_dash_S for motivation and comments.
+stdout, stderr = subprocess.Popen(
+ [sys.executable, '-Sc',
+ 'try:\n'
+ ' import ConfigParser\n'
+ 'except ImportError:\n'
+ ' print 1\n'
+ 'else:\n'
+ ' print 0\n'],
+ stdout=subprocess.PIPE, stderr=subprocess.PIPE).communicate()
+has_broken_dash_S = bool(int(stdout.strip()))
+
+# In order to be more robust in the face of system Pythons, we want to
+# run without site-packages loaded. This is somewhat tricky, in
+# particular because Python 2.6's distutils imports site, so starting
+# with the -S flag is not sufficient. However, we'll start with that:
+if not has_broken_dash_S and 'site' in sys.modules:
+ # We will restart with python -S.
+ args = sys.argv[:]
+ args[0:0] = [sys.executable, '-S']
+ args = map(quote, args)
+ os.execv(sys.executable, args)
+# Now we are running with -S. We'll get the clean sys.path, import site
+# because distutils will do it later, and then reset the path and clean
+# out any namespace packages from site-packages that might have been
+# loaded by .pth files.
+clean_path = sys.path[:]
+import site
+sys.path[:] = clean_path
+for k, v in sys.modules.items():
+ if k in ('setuptools', 'pkg_resources') or (
+ hasattr(v, '__path__') and
+ len(v.__path__)==1 and
+ not os.path.exists(os.path.join(v.__path__[0],'__init__.py'))):
+ # This is a namespace package. Remove it.
+ sys.modules.pop(k)
+
+is_jython = sys.platform.startswith('java')
+
+setuptools_source = 'http://peak.telecommunity.com/dist/ez_setup.py'
+distribute_source = 'http://python-distribute.org/distribute_setup.py'
+
+# parsing arguments
+def normalize_to_url(option, opt_str, value, parser):
+ if value:
+ if '://' not in value: # It doesn't smell like a URL.
+ value = 'file://%s' % (
+ urllib.pathname2url(
+ os.path.abspath(os.path.expanduser(value))),)
+ if opt_str == '--download-base' and not value.endswith('/'):
+ # Download base needs a trailing slash to make the world happy.
+ value += '/'
+ else:
+ value = None
+ name = opt_str[2:].replace('-', '_')
+ setattr(parser.values, name, value)
+
+usage = '''\
+[DESIRED PYTHON FOR BUILDOUT] bootstrap.py [options]
+
+Bootstraps a buildout-based project.
+
+Simply run this script in a directory containing a buildout.cfg, using the
+Python that you want bin/buildout to use.
+
+Note that by using --setup-source and --download-base to point to
+local resources, you can keep this script from going over the network.
+'''
+
+parser = OptionParser(usage=usage)
+parser.add_option("-v", "--version", dest="version",
+ help="use a specific zc.buildout version")
+parser.add_option("-d", "--distribute",
+ action="store_true", dest="use_distribute", default=False,
+ help="Use Distribute rather than Setuptools.")
+parser.add_option("--setup-source", action="callback", dest="setup_source",
+ callback=normalize_to_url, nargs=1, type="string",
+ help=("Specify a URL or file location for the setup file. "
+ "If you use Setuptools, this will default to " +
+ setuptools_source + "; if you use Distribute, this "
+ "will default to " + distribute_source +"."))
+parser.add_option("--download-base", action="callback", dest="download_base",
+ callback=normalize_to_url, nargs=1, type="string",
+ help=("Specify a URL or directory for downloading "
+ "zc.buildout and either Setuptools or Distribute. "
+ "Defaults to PyPI."))
+parser.add_option("--eggs",
+ help=("Specify a directory for storing eggs. Defaults to "
+ "a temporary directory that is deleted when the "
+ "bootstrap script completes."))
+parser.add_option("-t", "--accept-buildout-test-releases",
+ dest='accept_buildout_test_releases',
+ action="store_true", default=False,
+ help=("Normally, if you do not specify a --version, the "
+ "bootstrap script and buildout gets the newest "
+ "*final* versions of zc.buildout and its recipes and "
+ "extensions for you. If you use this flag, "
+ "bootstrap and buildout will get the newest releases "
+ "even if they are alphas or betas."))
+parser.add_option("-c", None, action="store", dest="config_file",
+ help=("Specify the path to the buildout configuration "
+ "file to be used."))
+
+options, args = parser.parse_args()
+
+# if -c was provided, we push it back into args for buildout's main function
+if options.config_file is not None:
+ args += ['-c', options.config_file]
+
+if options.eggs:
+ eggs_dir = os.path.abspath(os.path.expanduser(options.eggs))
+else:
+ eggs_dir = tempfile.mkdtemp()
+
+if options.setup_source is None:
+ if options.use_distribute:
+ options.setup_source = distribute_source
+ else:
+ options.setup_source = setuptools_source
+
+if options.accept_buildout_test_releases:
+ args.append('buildout:accept-buildout-test-releases=true')
+args.append('bootstrap')
+
+try:
+ import pkg_resources
+ import setuptools # A flag. Sometimes pkg_resources is installed alone.
+ if not hasattr(pkg_resources, '_distribute'):
+ raise ImportError
+except ImportError:
+ ez_code = urllib2.urlopen(
+ options.setup_source).read().replace('\r\n', '\n')
+ ez = {}
+ exec ez_code in ez
+ setup_args = dict(to_dir=eggs_dir, download_delay=0)
+ if options.download_base:
+ setup_args['download_base'] = options.download_base
+ if options.use_distribute:
+ setup_args['no_fake'] = True
+ ez['use_setuptools'](**setup_args)
+ if 'pkg_resources' in sys.modules:
+ reload(sys.modules['pkg_resources'])
+ import pkg_resources
+ # This does not (always?) update the default working set. We will
+ # do it.
+ for path in sys.path:
+ if path not in pkg_resources.working_set.entries:
+ pkg_resources.working_set.add_entry(path)
+
+cmd = [quote(sys.executable),
+ '-c',
+ quote('from setuptools.command.easy_install import main; main()'),
+ '-mqNxd',
+ quote(eggs_dir)]
+
+if not has_broken_dash_S:
+ cmd.insert(1, '-S')
+
+find_links = options.download_base
+if not find_links:
+ find_links = os.environ.get('bootstrap-testing-find-links')
+if find_links:
+ cmd.extend(['-f', quote(find_links)])
+
+if options.use_distribute:
+ setup_requirement = 'distribute'
+else:
+ setup_requirement = 'setuptools'
+ws = pkg_resources.working_set
+setup_requirement_path = ws.find(
+ pkg_resources.Requirement.parse(setup_requirement)).location
+env = dict(
+ os.environ,
+ PYTHONPATH=setup_requirement_path)
+
+requirement = 'zc.buildout'
+version = options.version
+if version is None and not options.accept_buildout_test_releases:
+ # Figure out the most recent final version of zc.buildout.
+ import setuptools.package_index
+ _final_parts = '*final-', '*final'
+ def _final_version(parsed_version):
+ for part in parsed_version:
+ if (part[:1] == '*') and (part not in _final_parts):
+ return False
+ return True
+ index = setuptools.package_index.PackageIndex(
+ search_path=[setup_requirement_path])
+ if find_links:
+ index.add_find_links((find_links,))
+ req = pkg_resources.Requirement.parse(requirement)
+ if index.obtain(req) is not None:
+ best = []
+ bestv = None
+ for dist in index[req.project_name]:
+ distv = dist.parsed_version
+ if _final_version(distv):
+ if bestv is None or distv > bestv:
+ best = [dist]
+ bestv = distv
+ elif distv == bestv:
+ best.append(dist)
+ if best:
+ best.sort()
+ version = best[-1].version
+if version:
+ requirement = '=='.join((requirement, version))
+cmd.append(requirement)
+
+if is_jython:
+ import subprocess
+ exitcode = subprocess.Popen(cmd, env=env).wait()
+else: # Windows prefers this, apparently; otherwise we would prefer subprocess
+ exitcode = os.spawnle(*([os.P_WAIT, sys.executable] + cmd + [env]))
+if exitcode != 0:
+ sys.stdout.flush()
+ sys.stderr.flush()
+ print ("An error occurred when trying to install zc.buildout. "
+ "Look above this message for any errors that "
+ "were output by easy_install.")
+ sys.exit(exitcode)
+
+ws.add_entry(eggs_dir)
+ws.require(requirement)
+import zc.buildout.buildout
+zc.buildout.buildout.main(args)
+if not options.eggs: # clean up temporary egg directory
+ shutil.rmtree(eggs_dir)
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67 buildout.cfg
@@ -0,0 +1,67 @@
+[buildout]
+unzip = true
+prefer-final = true
+newest = false
+develop = .
+
+eggs =
+ sit
+
+parts +=
+# development tools
+ py
+ pyflakes
+ pep8
+ sphinxbuilder
+ test
+
+
+# =============================================================
+# Prepare a python interpreter with all buildout eggs installed
+# =============================================================
+[py]
+recipe = zc.recipe.egg
+eggs = ${buildout:eggs}
+extra-paths = ${buildout:directory}
+dependent-scripts = true
+interpreter = py
+
+
+# ===============================
+# Prepare syntax validation tools
+# ===============================
+[pyflakes]
+recipe = zc.recipe.egg
+scripts =
+ pyflakes
+eggs =
+ pyflakes
+entry-points = pyflakes=pkg_resources:run_script
+arguments = 'pyflakes', 'pyflakes'
+
+[pep8]
+recipe = zc.recipe.egg
+eggs =
+ pep8
+scripts =
+ pep8
+
+
+# ======================================
+# Prepare Sphinx documentation generator
+# ======================================
+[sphinxbuilder]
+recipe = collective.recipe.sphinxbuilder
+source = ${buildout:directory}/docs
+interpreter = ${buildout:directory}/bin/py
+
+
+# ==========================================
+# Prepare test-runner for running unit tests
+# ==========================================
+[test]
+recipe = zc.recipe.testrunner
+defaults = ['--exit-with-status', '--auto-color', '--auto-progress']
+eggs =
+ ${buildout:eggs}
+ sit [test]
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13 docs/HISTORY.rst
@@ -0,0 +1,13 @@
+Changelog
+=========
+
+
+0.1 (Unreleased)
+----------------
+
+- Demonstration program for scipy on Windows.
+ [kunta]
+
+- Project skeleton.
+ [kunta, zupo]
+
View
5 docs/LICENSE.rst
@@ -0,0 +1,5 @@
+License
+=======
+
+Restricted.
+
View
24 pre-commit-check.sh
@@ -0,0 +1,24 @@
+#!/bin/bash
+
+function handle_exit {
+ if [ $? -ne 0 ]; then
+ EXITCODE=1
+ fi
+}
+
+EXITCODE=0
+
+echo '====== Running tests ========='
+bin/test; handle_exit
+
+echo '====== Running PyFlakes ======'
+bin/pyflakes src/sit/math; handle_exit
+bin/pyflakes setup.py; handle_exit
+
+echo '====== Running pep8 =========='
+bin/pep8 --ignore=E501 --count src/sit/math; handle_exit
+bin/pep8 --ignore=E501 --count setup.py; handle_exit
+
+if [ $EXITCODE -ne 0 ]; then
+ exit 1
+fi
View
4 setup.cfg
@@ -0,0 +1,4 @@
+[egg_info]
+tag_build =
+tag_date = 0
+tag_svn_revision = 0
View
46 setup.py
@@ -0,0 +1,46 @@
+# -*- coding: utf-8 -*-
+"""Installer for this package."""
+
+from setuptools import find_packages
+from setuptools import setup
+
+import os
+
+
+def read(*rnames):
+ return open(os.path.join(os.path.dirname(__file__), *rnames)).read()
+
+version = read('src', 'sit', 'math', 'version.txt').strip()
+
+setup(
+ name='sit.math',
+ version=version,
+ description="Mathematics module for Sediment Isotope Tomography (SIT)",
+ long_description=read('README.rst') +
+ read('docs', 'HISTORY.rst') +
+ read('docs', 'LICENSE.rst'),
+ classifiers=[
+ "Programming Language :: Python",
+ "Topic :: Scientific/Engineering",
+ ],
+ keywords='SIT math scipy',
+ author='NiteoWeb Ltd.',
+ author_email='info@niteoweb.com',
+ url='http://www.niteoweb.com',
+ license='Restricted',
+ packages=find_packages('src', exclude=['ez_setup']),
+ namespace_packages=['sit'],
+ package_dir={'': 'src'},
+ include_package_data=True,
+ zip_safe=False,
+ install_requires=[
+ 'setuptools',
+ ],
+ extras_require={
+ # list libs needed for unittesting this project
+ 'test': [
+ 'mock',
+ 'unittest2',
+ ],
+ },
+)
View
1  src/sit/math/version.txt
@@ -0,0 +1 @@
+0.1
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