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README.md

SMARTree

Mathematica code for Bayesian inference of local trees by the SMC. It is also available from the website: http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

##Get Started##

  1. Clone in Desktop or Download ZIP.
  2. Read "README_SMARTree.txt".

##Reference## Zheng, C., Kuhner, M, and Thompson, E. A. 2014. Bayesian inference of local trees along chromosomes by the sequential Markov coalescent. Journal of Molecular Evolution, 78:279-292.

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Mathematica code for Bayesian inference of local trees by the SMC

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