Mathematica code for Bayesian inference of local trees by the SMC
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
InferSMARTree
Mathematica Packages
.gitattributes
.gitignore
README.md
README_SMARTree.txt

README.md

SMARTree

Mathematica code for Bayesian inference of local trees by the SMC. It is also available from the website: http://www.stat.washington.edu/thompson/Genepi/pangaea.shtml.

##Get Started##

  1. Clone in Desktop or Download ZIP.
  2. Read "README_SMARTree.txt".

##Reference## Zheng, C., Kuhner, M, and Thompson, E. A. 2014. Bayesian inference of local trees along chromosomes by the sequential Markov coalescent. Journal of Molecular Evolution, 78:279-292.