TetraOrigin

Mathematica package for haplotype reconstruction in a full-sib tetraploid family.

##Getting started

1. Clone in Desktop or Download ZIP.

2. Set path to the folder "TetraOrigin_Packages", and then load the package. For example,

   SetDirectory["D:\\Chaozhi\\GitHub Clones\\TetraOrigin\\TetraOrigin_Packages"];
   Needs["TetraOrigin`"]
   SetDirectory[NotebookDirectory[]];
   

3. Go through "TetraOrigin_Tutorial.nb" or "TetraOrigin_Example.nb" in the folder "TetraOrigin_Tutorial".

##References

Chaozhi Zheng, Roeland E. Voorrips, Johannes Jansen, Christine A. Hackett, Julie Ho, and Marco C.A.M. Bink. 2016. Probabilistic multilocus haplotype reconstruction in outcrossing tetraploids.