Skip to content
This repository

HTTPS clone URL

Subversion checkout URL

You can clone with HTTPS or Subversion.

Download ZIP
tree: 0b6cb8ff6d
Fetching contributors…

Cannot retrieve contributors at this time

file 63 lines (45 sloc) 1.918 kb
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63
Loading required package: graph
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: DBI
Loading required package: SparseM
Package SparseM (0.80) loaded.
To cite, see citation("SparseM")


Attaching package: 'SparseM'


The following object(s) are masked from package:stats :

model.response


The following object(s) are masked from package:base :

backsolve,
chol


groupGOTerms: GOBPTerm, GOMFTerm, GOCCTerm environments built.

Building most specific GOs ..... ( 3 GO terms found. )

Build GO DAG topology .......... ( 7 GO terms and 6 relations. )

Annotating nodes ............... ( 4 genes annotated to the GO terms. )

-- Classic Algorithm --

the algorithm is scoring 6 nontrivial nodes
parameters:
test statistic: fisher
       GO.ID Term Annotated Significant
1 GO:0042578 phosphoric ester hydrolase activity 2 2
2 GO:0016791 phosphatase activity 1 1
3 GO:0003674 molecular_function 4 2
4 GO:0003824 catalytic activity 4 2
5 GO:0016787 hydrolase activity 4 2
6 GO:0016788 hydrolase activity, acting on ester bond... 4 2
7 GO:0016298 lipase activity 2 0
  Expected elimFisher
1 1.0 0.17
2 0.5 0.50
3 2.0 1.00
4 2.0 1.00
5 2.0 1.00
6 2.0 1.00
7 1.0 1.00
-> GO:0042578 (phosphoric ester hydrolase activity) : 0.1667
GeneA
GeneC
Something went wrong with that request. Please try again.