Latest commit 7cc2de8 Sep 9, 2016 1 @chapmanb Support Biopython 1.68 with sub_features workaround
Biopython deprecated and removed sub_features but the GFF code has not
yet put in proper fixes. This works around the issue by adding
sub_features when missing so GFF output still works correctly
with Biopython >= 1.68.

Fixes chapmanb/bcbb#110. Fixes biopython/biopython#928

README.rst

bcbio-gff

A python library to read and write Generic Feature Format (GFF). See the wiki documentation for details on usage. The goal is to integrate this code in gffutils and Biopython.

Most of the functionality from this library has been integrated into ggfutils and we recommend using that for parsing GFF. It's an improved approach to handling GFF and well maintained by Ryan Dale.

Installation from bcbio-gff in pypi:

pip install bcbio-gff

This code is freely available for use under the Biopython license.