UMI: Pass full fastq name for duplex prep

The previous regex only passed the first part of a name, dropping secondary tag information already present from bcl2fastq.
chapmanb · 06fd9d67f79061f6791d75e5b6f3fb760172f680 · chapmanb committed Jun 20, 2017 · Jun 20, 2017 · 06fd9d6
1 parent d9f4b75
commit 06fd9d67f79061f6791d75e5b6f3fb760172f680
Unified Split

Showing with 2 additions and 2 deletions.

+2 −2 scripts/bcbio_fastq_umi_prep.py
diff --git a/scripts/bcbio_fastq_umi_prep.py b/scripts/bcbio_fastq_umi_prep.py
@@ -38,8 +38,8 @@
 """
 
 duplex_transform = r"""{
-    "read1": "(?P<name>[^\\s]+).*\\n(?P<CB1>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n",
-    "read2": "(?P<name>[^\\s]+).*\\n(?P<CB2>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n"
+    "read1": "(?P<name>@.*)\\n(?P<CB1>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n",
+    "read2": "(?P<name>@.*)\\n(?P<CB2>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n"
 }"""
 
 def run_single(args):