From 06fd9d67f79061f6791d75e5b6f3fb760172f680 Mon Sep 17 00:00:00 2001
From: chapmanb <chapmanb@50mail.com>
Date: Tue, 20 Jun 2017 05:05:36 -0400
Subject: [PATCH] UMI: Pass full fastq name for duplex prep

The previous regex only passed the first part of a name, dropping
secondary tag information already present from bcl2fastq.
---
 scripts/bcbio_fastq_umi_prep.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/scripts/bcbio_fastq_umi_prep.py b/scripts/bcbio_fastq_umi_prep.py
index 4aa1e29cb..5fe1ca9fa 100755
--- a/scripts/bcbio_fastq_umi_prep.py
+++ b/scripts/bcbio_fastq_umi_prep.py
@@ -38,8 +38,8 @@
 """
 
 duplex_transform = r"""{
-    "read1": "(?P<name>[^\\s]+).*\\n(?P<CB1>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n",
-    "read2": "(?P<name>[^\\s]+).*\\n(?P<CB2>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n"
+    "read1": "(?P<name>@.*)\\n(?P<CB1>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n",
+    "read2": "(?P<name>@.*)\\n(?P<CB2>.{%s})(?P<seq>.*)\\n\\+(.*)\\n(.{%s})(?P<qual>.*)\\n"
 }"""
 
 def run_single(args):