diff --git a/HISTORY.md b/HISTORY.md
index 57c8a23f4..9a949d8f0 100644
--- a/HISTORY.md
+++ b/HISTORY.md
@@ -1,4 +1,4 @@
-## 1.0.4 (in progress)
+## 1.0.4 (9 July 2017)
 
 - Initial support for GATK4 variant calling with HaplotypeCaller and MuTect2.
   Requires `tools_on: [gatk4]` https://github.com/bcbio/bcbio_validations/tree/master/gatk4
diff --git a/docs/conf.py b/docs/conf.py
index 9d111567d..b43f0cdd2 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -48,9 +48,9 @@
 # built documents.
 #
 # The short X.Y version.
-version = '1.0.3'
+version = '1.0.4'
 # The full version, including alpha/beta/rc tags.
-release = '1.0.3'
+release = '1.0.4'
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
diff --git a/requirements-conda.txt b/requirements-conda.txt
index efacd4765..a560f6da6 100644
--- a/requirements-conda.txt
+++ b/requirements-conda.txt
@@ -1 +1 @@
-bcbio-nextgen=1.0.3
+bcbio-nextgen=1.0.4
diff --git a/requirements.txt b/requirements.txt
index 91cb3fd33..18626ee4a 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1 +1 @@
-bcbio-nextgen==1.0.3
+bcbio-nextgen==1.0.4
diff --git a/setup.py b/setup.py
index 83d4ad15f..767a9347b 100755
--- a/setup.py
+++ b/setup.py
@@ -4,7 +4,7 @@
 import os
 from setuptools import setup, find_packages
 
-version = "1.0.4a0"
+version = "1.0.4"
 
 def write_version_py():
     version_py = os.path.join(os.path.dirname(__file__), 'bcbio', 'pipeline',