Add barcode files internal to bcbio-nextgen for inDrop sequencing.

This provides support for v2 and v3 of the Harvard inDrop protocol.

MANIFEST.in

@@ -1,5 +1,7 @@
 include *.txt
 include *.md
+include bcbio/data/umis/*.txt
+include bcbio/data/umis/*.json
 include config/*.yaml
 include config/*.ini
 include tests/*.py

bcbio/data/umis/harvard-indrop-v2-cb1.txt

@@ -0,0 +1,384 @@
+GTTTGTTT
+ACCGTGTTT
+GATAGTGTTT
+TGAGGCGGTTT
+GATCGTTT
+ATCACGTTT
+GATGTAGTTT
+TGACACAGTTT
+CTTTCTTT
+AGCCTCTTT
+GACGGGCTTT
+TGAATGACTTT
+TGCTATTT
+ACGGAATTT
+GACATTTGTT
+TGAGTTCTGTT
+CCGCTGTT
+AAAATCGTT
+GATTGGCGTT
+TGACTACCGTT
+GTAACGTT
+AACTGAGTT
+GAAGGCAGTT
+TGACTGTTCTT
+ACCTTCTT
+AATACTCTT
+GAGAAGGCTT
+TGAAGGAGCTT
+TCATCCTT
+AAGCGCCTT
+GAGGTCCCTT
+TGACAATACTT
+TTGGACTT
+ACCCGACTT
+GATCTCACTT
+TGAGACAACTT
+TCCTTATT
+AGATGTATT
+GAGTCATATT
+TGAGCCGGATT
+CTTCGATT
+AGAACGATT
+GAACGCCATT
+TGACATACATT
+ATCTTTGT
+ACTACTTGT
+GAAAGATTGT
+TGACTTGGTGT
+TTATCTGT
+ATGGCCTGT
+GACGAGATGT
+TGAGTCCATGT
+GGGTTGGT
+ACCCTTGGT
+GATCTGTGGT
+TGAAAACTGGT
+GCATGGGT
+AAATCGGGT
+GATTGAGGGT
+TGATCGACGGT
+CTTCAGGT
+AGGGAAGGT
+GAGAATTCGT
+TGAGTCGTCGT
+TTAAGCGT
+ATGCTCCGT
+GAACTGCCGT
+TGATAACCCGT
+CCAACCGT
+AGTTTACGT
+GACAATTAGT
+TGACGGGTAGT
+GCTCTAGT
+AGTATGAGT
+GATTCCGAGT
+TGACCAGCAGT
+TGACCAGT
+AAGCGAAGT
+GATGGTTTCT
+TGACACTTTCT
+AAGCTTCT
+ATTGATTCT
+GATGAGGTCT
+TGACCTCGTCT
+GTCTCTCT
+AGCACCTCT
+GAGCGTTGCT
+TGATACGTGCT
+GGCATGCT
+AAGATGGCT
+GAACCACGCT
+TGAGTGGAGCT
+TCGAAGCT
+ATGTGTCCT
+GACGACTCCT
+TGATATTGCCT
+TTCGGCCT
+AAAACGCCT
+GACAGTCCCT
+TGATTTACCCT
+GCTTACCT
+AATATACCT
+GAGGGAACCT
+TGACCATTACT
+TAACTACT
+ATTGTGACT
+GACACGGACT
+TGAGAAGCACT
+GTTCAACT
+ACCGCAACT
+GATACAAACT
+TGACCTGTTAT
+TAGCTTAT
+AGGGTGTAT
+GAGAGAGTAT
+TGAACATCTAT
+TTGCATAT
+AACCCATAT
+GACGATTGAT
+TGATCCCTGAT
+GGTGGGAT
+AATGCGGAT
+GAACTAGGAT
+TGAAGCGCGAT
+GTTACGAT
+AGCCAAGAT
+GAGTTGTCAT
+TGACAAGTCAT
+ATATGCAT
+ACTCCGCAT
+GAGAGCCCAT
+TGACAGACCAT
+CGGCACAT
+AAAGGTAAT
+GACGAATAAT
+TGACTCAGAAT
+ACTTCAAT
+AGGGCCAAT
+GAATGGAAAT
+TGACAACAAAT
+AATGTTTG
+ACTGCGTTG
+GAATTCCTTG
+TGAAACCCTTG
+GTACCTTG
+ACTAGATTG
+GAGAGAATTG
+TGAAGGTTGTG
+TACTTGTG
+AGGTTAGTG
+GAATCAAGTG
+TGACGAGTCTG
+CCCATCTG
+AGCAACCTG
+GATTAAACTG
+TGATCGTCATG
+GCAGCATG
+AAATGAATG
+GACCCGAATG
+TGATAGAAATG
+AGAGGTGG
+ACAACGTGG
+GACTGTCTGG
+TGATTCGCTGG
+TCATATGG
+AGTGGATGG
+GAGACGATGG
+TGAATGCATGG
+CTTACGGG
+AAGAACGGG
+GACAAGAGGG
+TGAAAACAGGG
+TGCAAGGG
+AAAAGTCGG
+GAGATCTCGG
+TGACGTATCGG
+ATTTCCGG
+AAGCTACGG
+GATAAGACGG
+TGAAGCGTAGG
+TAAATAGG
+ATCATGAGG
+GATGTAAAGG
+TGAGACAAAGG
+GAGTTTCG
+ATCGGTTCG
+GACTTCTTCG
+TGAAAATGTCG
+TAGCCTCG
+ATTGGATCG
+GATGCCATCG
+TGATTAGTCCG
+TACAGCCG
+AACTCACCG
+GATCGGTACG
+TGAATTCGACG
+GTTGCACG
+AATCCCACG
+GATGTACACG
+TGAAACACACG
+AGGCAACG
+AACGAAACG
+GAGGCGTTAG
+TGATCCCGTAG
+TAGTCTAG
+ACGTGCTAG
+GACCTACTAG
+TGATGTTTGAG
+GATGTGAG
+ATTTGGGAG
+GATGGAGGAG
+TGATCACCGAG
+CTATAGAG
+AACGCAGAG
+GACCCTTCAG
+TGAACGCTCAG
+CATCGCAG
+ATCTAGCAG
+GATGTTCCAG
+TGAATACCCAG
+TGCGACAG
+AGGTCACAG
+GATTTAACAG
+TGACACAACAG
+GGAAACAG
+AGGCCTAAG
+GAACACTAAG
+TGACGTAGAAG
+GGATAAAG
+AAGTGAAAG
+GAGTCCAAAG
+TGATGTCTTTC
+CGTATTTC
+AATATCTTC
+GATGGGATTC
+TGAGCGCATTC
+TTTGTGTC
+ACAGGTGTC
+GACGCTAGTC
+TGAGGTTTCTC
+TTCCGCTC
+ACACTCCTC
+GATGACCCTC
+TGAGTACACTC
+TGCGTATC
+ATCTGCATC
+GATAACCATC
+TGAGCCACATC
+CTTTAATC
+AAAGTAATC
+GATCCCAATC
+TGAGGGAAATC
+CAGTTTGC
+ACTGAGTGC
+GAAGTGATGC
+TGACTCGATGC
+GCTTTGGC
+AATGTTGGC
+GATACCAGGC
+TGACACAAGGC
+ATCAGCGC
+AGTTACCGC
+GAGAATACGC
+TGATTGCACGC
+AACTTAGC
+AACGGTAGC
+GACCCATAGC
+TGACTACGAGC
+GGAGAAGC
+ATTCGTTCC
+GAGGACTTCC
+TGATCCAGTCC
+AGAAGTCC
+AAAACCTCC
+GACTTACTCC
+TGAAACAATCC
+ACCTTGCC
+AGAAGTGCC
+GAATTGGGCC
+TGATTGTCGCC
+TTATAGCC
+AGCAAAGCC
+GACATCTCCC
+TGAGTAATCCC
+TGATGCCC
+AAATGACCC
+GACTAGACCC
+TGAGATTTACC
+TGGCTACC
+ATTAGGACC
+GAGAAAGACC
+TGATCGACACC
+GTGTAACC
+ACCCTAACC
+GATCTCAACC
+TGATTGTTTAC
+CGGCTTAC
+ACAGATTAC
+GAAAGCGTAC
+TGAGTCCGTAC
+ACGTATAC
+AGTCAATAC
+GACTCTTGAC
+TGAGGTCTGAC
+AACCTGAC
+ATAGTGGAC
+GATGACGGAC
+TGAGCAAGGAC
+GATTAGAC
+ATTCCAGAC
+GAAGGAAGAC
+TGAGAGTTCAC
+TGCCTCAC
+ATTTATCAC
+GAATGGGCAC
+TGACTTCGCAC
+AGCACCAC
+AGGTGACAC
+GACCTGACAC
+TGACTAGTAAC
+AGCAGAAC
+ACGGACAAC
+GATCGGTTTA
+TGAAGAAGTTA
+GGCCCTTA
+AATGGATTA
+GACCACATTA
+TGAGCAGGGTA
+GAGCGGTA
+ACTTAGGTA
+GAGGGAGGTA
+TGACTCGCGTA
+CGAACGTA
+AATTCAGTA
+GATTGATCTA
+TGATGTGGCTA
+ATCCGCTA
+AAAAGCCTA
+GACGTACCTA
+TGAGGCTACTA
+AGAGACTA
+ACGTGGATA
+GAGACAGATA
+TGATTCACATA
+CGCTAATA
+ACCATTTGA
+GACGCCTTGA
+TGAGAGGCTGA
+TGGTATGA
+AAGCTATGA
+GATGAAATGA
+TGACTTCTGGA
+TCCAGGGA
+AGTGTCGGA
+GAACAGCGGA
+TGAATATAGGA
+GCAGTCGA
+AAAACTCGA
+GAGATTGCGA
+TGAATGACCGA
+ACCCACGA
+AGGGAACGA
+GAAGTTTAGA
+TGAGGAATAGA
+AAATCAGA
+AGTCAAAGA
+GACCTATTCA
+TGAAGGATTCA
+CGACGTCA
+ACGCTCTCA
+GATGTGCTCA
+TGACTGGTGCA
+TACCGGCA
+ATAGTCGCA
+GACGTCAGCA
+TGAATGAAGCA
+CCCAAGCA
+AGCTTTCCA
+GATCCGTCCA
+TGAACTAGCCA
+AATTCCCA
+AAGACACCA
+GAGTTAACCA
+TGATGATAACA