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Issues: bcbio/bcbio-nextgen

bcbio priorities
#3242 opened May 27, 2020 by naumenko-sa
Open 2
Welcome bcbio 1.2.9
#3592 opened Dec 16, 2021 by naumenko-sa
Open 1
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Issues list

KeyError: 'MB1' ' returned non-zero exit status 1. when running scRNA-seq analysis for indropv3 known-issue-and-how-to-fix
#3740 opened Feb 6, 2024 by juychen
1
MultiQC error: cannot import name 'TypedDict' from 'typing'
#3739 opened Feb 1, 2024 by VerenaPass
2
ATAC-seq
#3730 opened Dec 4, 2023 by naumenko-sa
Error upgrading bcbio-nextgen to add the genome and an aligner
#3729 opened Nov 30, 2023 by moutazhelal
vcfanno bug
#3728 opened Nov 17, 2023 by wangpenhok
resources assignment when perform parallel jobs
#3727 opened Nov 15, 2023 by wangpenhok
1
mm10 Genome Installation Error
#3720 opened Oct 31, 2023 by daisysdan
Can bcbio customize the user-defined GLIBC directory?
#3718 opened Oct 13, 2023 by lovebaboon1989
7
umi stat
#3715 opened Aug 23, 2023 by dauss75
1
On torque cluster, piped_bamprep "result not ready, cannot allocate memory" error
#3713 opened Jun 27, 2023 by fouriejoubert
1
Docker version of Bcbio
#3711 opened Jun 8, 2023 by Adrian-Zet
Fail to build Normal DB in PureCN pipeline
#3710 opened Jun 3, 2023 by WuRAFY
Only header but no mutations were present in varscan vcf output.
#3709 opened Jun 3, 2023 by EvaPang2022
Error installing hg38 dbsnp data: ERROR 404: Not Found
#3707 opened May 10, 2023 by amizeranschi
3
tabix error on effects-ploidyfix.vcf.gz
#3706 opened Apr 6, 2023 by hongenxu
Wrong bcbio-nextgen versioned pinned in requirements file for v1.2.2 and later
#3705 opened Mar 31, 2023 by asee-imagia
1
Java error after fresh install of v1.2.9
#3702 opened Mar 8, 2023 by lindakohn
5
Methylation pipeline
#3700 opened Mar 2, 2023 by Adrian-Zet
2
Error during install - dbsnp issue
#3699 opened Feb 15, 2023 by jchien-ucd
15
COSMIC NEWER VERSION SUPPORT(v94 and later)
#3698 opened Feb 13, 2023 by wangpenhok
6
Provide a bait file to Picard's CollectHsMetrics
#3695 opened Jan 27, 2023 by asee-imagia Loading…
ValueError: Could not find directory in config for snpeff
#3693 opened Jan 3, 2023 by azzatha
1
recalibrate=true fails, Unsupported class file major version 55
#3692 opened Dec 25, 2022 by asalimih
3
[main_samview] fail to read the header from "filename.sam".
#3690 opened Dec 13, 2022 by gabyrudd22
Bringing back Docker support, possibly as a replacement for the various Conda environments
#3688 opened Dec 6, 2022 by amizeranschi
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