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---
# Configuration file defining perl libraries to install via CPAN
cpan:
# build
- 'Locale::Maketext::Lexicon'
- 'Module::Signature'
- 'Build'
# dependencies
- 'Algorithm::C3'
- 'Algorithm::Diff'
- 'Algorithm::Munkres'
- 'Array::Compare'
- 'Bit::Vector'
- 'Bundle::LWP'
- 'Cache'
- 'Cairo'
- 'Carp::Assert'
- 'Carp::Clan'
- 'CGI::Application'
- 'CGI::Application::Plugin::Authentication'
- 'CGI::Application::Plugin::Authorization'
- 'CGI::Application::Plugin::TT'
- 'CGI::Application::Plugin::HTDot'
- 'CGI::Session'
- 'Class::Accessor'
- 'Class::C3'
- 'Class::C3::XS'
- 'Class::Data::Inheritable'
- 'Class::Inspector'
- 'Class::ISA'
- 'Class::MOP'
- 'Clone'
- 'Config::Auto'
- 'Config::IniFiles'
- 'Config::Simple'
- 'Convert::Binary::C'
- 'Crypt::SSLeay'
- 'Data::FormValidator'
- 'Data::OptList'
- 'Data::Stag'
- 'Date::Calc'
- 'Date::Manip'
- 'DateTime::TimeZone'
- 'DateTime::Locale'
- 'DateTime'
- 'Devel::GlobalDestruction'
- 'Devel::StackTrace'
- 'Digest::MD5'
- 'Digest::HMAC'
- 'Digest::SHA1'
- 'Email::Valid'
- 'Error'
- 'Exception::Class'
- 'Exception::Class::TryCatch'
- 'ExtUtils::Depends'
- 'ExtUtils::Manifest'
- 'ExtUtils::ModuleMaker'
- 'ExtUtils::PkgConfig'
- 'FCGI'
- 'File::Copy::Recursive'
- 'File::Listing'
- 'File::MMagic'
- 'File::Slurp'
- 'File::Which'
- 'Font::AFM'
- 'FreezeThaw'
- 'GD::Graph'
- 'GD::Text'
- 'Glib'
- 'Gtk2'
- 'Gnome2::Canvas'
- 'Gnome2::VFS'
- 'Gnome2'
- 'Graph'
- 'GraphViz'
- 'Heap'
- 'HTML::Entities'
- 'HTML::FillInForm'
- 'HTML::FormatData'
- 'HTML::HeadParser'
- 'HTML::Parser'
- 'HTML::Tagset'
- 'HTML::Template'
- 'HTML::Tree'
- 'Image::Size'
- 'Inline'
- 'IO::Compress::Base'
- 'IO::Compress::Bzip2'
- 'IO::Compress::Lzf'
- 'IO::Pty'
- 'IO::Socket::SSL'
- 'IO::String'
- 'IO::Stringy'
- 'IO::Unread'
- 'IPC::Run'
- 'IPC::ShareLite'
- 'IPC::Signal'
- 'Jcode'
- 'List::MoreUtils'
- 'Locale::gettext'
- 'Log::Dispatch'
- 'LWP::Simple'
- 'Mail::Internet'
- 'Math::Derivative'
- 'Math::Random'
- 'Math::Spline'
- 'MIME::Tools'
- 'MIME::Types'
- 'MLDBM'
- 'Module::Build'
- 'MRO::Compat'
- 'Net::Daemon'
- 'Net::DBus'
- 'Net::DNS'
- 'Net::Domain::TLD'
- 'Net::IP'
- 'Net::LibIDN'
- 'Net::SSLeay'
- 'OLE::Storage'
- 'Pango'
- 'Params::Util'
- 'Params::Validate'
- 'Parse::RecDescent'
- 'Perl6::Junction'
- 'Pod::Xhtml'
- 'PostScript::File'
- 'PostScript::TextBlock'
- 'Proc::InvokeEditor'
- 'Proc::WaitStat'
- 'Regexp::Common'
- 'RPC::XML'
- 'Set::Scalar'
- 'Scalar::Util'
- 'Scope::Guard'
- 'SOAP::Lite'
- 'Sort::Naturally'
- 'Spreadsheet::ParseExcel'
- 'Spreadsheet::ParseExcel::Simple'
- 'Spreadsheet::WriteExcel'
- 'Storable'
- 'SQL::Statement'
- 'Statistics::Descriptive'
- 'Sub::Exporter'
- 'Sub::Install'
- 'Sub::Name'
- 'Sub::Uplevel'
- 'SVG::Graph'
- 'SVG'
- 'Syntax::Highlight::Perl::Improved'
- 'Task::Weaken'
- 'Term::ReadKey'
- 'Test::Exception'
- 'Text::CharWidth'
- 'Text::CSV'
- 'Text::CSV_XS'
- 'Text::Iconv'
- 'Text::ParseWords'
- 'Test::Harness'
- 'Test::More'
- 'Tie::IxHash'
- 'Tree::DAG_Node'
- 'Try::Tiny'
- 'Unicode::Map'
- 'UNIVERSAL::require'
- 'URI::Escape'
- 'UUID'
- 'WWW::RobotRules'
- 'XML::DOM'
- 'XML::DOM::XPath'
- 'XML::Filter::BufferText'
- 'XML::LibXML '
- 'XML::NamespaceSupport'
- 'XML::Parser'
- 'XML::Parser::PerlSAX'
- 'XML::RegExp'
- 'XML::SAX'
- 'XML::SAX::Expat'
- 'XML::SAX::Writer'
- 'XML::Simple'
- 'XML::Twig'
- 'XML::Writer'
- 'XML::XPathEngine'
- 'XML::XPath'
- 'YAML'
- 'YAML::Syck'
# Database drivers
- 'DB_File'
- 'DBI'
- 'DBD::AnyData'
- 'DBD::CSV'
- 'DBD::mysql'
- 'DBD::Pg'
- 'DBD::SQLite'
# Biome : these will definitely be added to over time
- 'Moose'
- 'MooseX::ClassAttribute'
- 'MooseX::Types'
- 'MooseX::Role::Parameterized'
- 'MooseX::Aliases'
# Biology
- 'Ace'
- 'Bio::ASN1::EntrezGene'
- 'Bio::Graphics'
- 'Bio::Phylo'
- 'http://www.cpan.org/authors/id/C/CJ/CJFIELDS/BioPerl-1.6.901.tar.gz'
- 'Bio::Das'
- 'Bio::GFF3::LowLevel'
# Currently have problems building on CentOS
# - 'AnyData'
# - 'Convert::BinHex'
# - 'XML'
# - 'XML::LibXSLT'
# - 'Modern::Perl'
# These need samtools and Jim Kent's source trees so need to be done by hand
# - 'Bio::DB::Sam'
# - 'Bio::DB::BigFile'