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---
# Configuration file defining ruby libraries to install
# using gem install (avoiding the distribution package manager)
#
# Gems are installed for Ruby1.9
gems:
- addressable
- cake
- cheat
- fastercsv
- hpricot
- htmlentities
- json
- kwalify
- libxml-ruby
- uuidtools
- xml-simple
# science
- bio
- bio-bwa
- bio-gff3
- biomart
#- bio-biolinux # error: uninitialized constant Syck::Syck
# databases
- couchdb-ruby
- data_objects
- dm-adjust
- dm-aggregates
- dm-ar-finders
- dm-cli
- dm-constraints
- dm-core
- dm-is-list
- dm-is-nested_set
- dm-is-remixable
- dm-is-searchable
- dm-is-state_machine
- dm-is-tree
- dm-is-versioned
- dm-migrations
- dm-observer
- dm-tags
- dm-timestamps
- dm-validations
- do_sqlite3
- datamapper
- dm-rest-adapter
- dm-serializer
- dm-types
# Require up to date ruby. Fail on Centos default
- vagrant
- mysql
- do_mysql
# sqlite3-ruby is renamed with sqlite3
- sqlite3
# Problems building on 1.9.1
#- dm-ferret-adapter
#- dm-sweatshop
#- bio-blastxmlparser
#- ruby-ensembl-api