cloudbiolinux/ggd-recipes/hg38/hisat2.yaml at master · chapmanb/cloudbiolinux · GitHub

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# hisat2 (v2.0.1) reference with Ensembl release 78 exon and splicesite annotations
# Derived from NCBI set with HLA and decoy alternative alleles
# http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/GRCh38_reference_genome/
# README.md has an in depth description of how this was created
---
attributes:
  name: hisat2
  version: 12-07-2015
recipe:
  full:
    recipe_type: bash
    recipe_cmds:
      - |
        url=https://s3.amazonaws.com/biodata/genomes/hg38-hisat2-12-07-2015.tar.xz
        wget -qO- $url > hg38-hisat2-tar.xz
        tar Jxvf hg38-hisat2-tar.xz
        rm hg38-hisat2-tar.xz
    recipe_outfiles:
      - hisat2/hg38.1.ht2
      - hisat2/hg38.2.ht2
      - hisat2/hg38.3.ht2
      - hisat2/hg38.4.ht2
      - hisat2/hg38.5.ht2
      - hisat2/hg38.6.ht2
      - hisat2/hg38.7.ht2
      - hisat2/hg38.8.ht2
      - hisat2/README.md