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Merge pull request #251 from matthdsm/master

added dbnsfp/dbscsnv configs, updated git hashes
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2 parents a67accf + 835479b commit 2e893d23aa857b153e3d7e91f92e52cc0cefcd19 @chapmanb committed on GitHub May 22, 2017
Showing with 14 additions and 4 deletions.
  1. +6 −2 ggd-recipes/GRCh37/vcfanno.yaml
  2. +1 −0 ggd-recipes/hg38-noalt/vcfanno.yaml
  3. +7 −2 ggd-recipes/hg38/vcfanno.yaml
@@ -3,14 +3,14 @@
---
attributes:
name: vcfanno
- version: 20170331
+ version: 20170522
recipe:
full:
recipe_type: bash
recipe_cmds:
- |
vcfanno_githash=5fcce8db2aeee016ab927c8ca36a715c02f982f9
- bcbio_githash=13ef069207dbd6fa5f85c09c4ad8de176b74c39e
+ bcbio_githash=5bcfde79c083d5c34f13f81fe578b4606a7cc80c
mkdir -p config/vcfanno
cd config/vcfanno
gemini_baseurl=https://github.com/brentp/vcfanno/raw/$vcfanno_githash/example
@@ -19,9 +19,13 @@ recipe:
bcbio_baseurl=https://github.com/chapmanb/bcbio-nextgen/raw/$bcbio_githash/config/vcfanno
wget --no-check-certificate -O rnaedit.conf -c $bcbio_baseurl/GRCh37-rnaedit.conf
wget --no-check-certificate -O rnaedit.lua -c $bcbio_baseurl/GRCh37-rnaedit.lua
+ wget --no-check-certificate -O dbnsfp.conf -c $bcbio_baseurl/GRCh37-dbnsfp.conf
+ wget --no-check-certificate -O dbscsnv.conf -c $bcbio_baseurl/GRCh37-dbscsnv.conf
recipe_outfiles:
- config/vcfanno/gemini.lua
- config/vcfanno/gemini.conf
- config/vcfanno/rnaedit.lua
- config/vcfanno/rnaedit.conf
+ - config/vcfanno/dbnsfp.conf
+ - config/vcfanno/dbscsnv.conf
@@ -3,19 +3,24 @@
---
attributes:
name: vcfanno
- version: 20170110
+ version: 20170522
recipe:
full:
recipe_type: bash
recipe_cmds:
- |
- githash=ac5890aab096370d41c276d747e6f9eef0bf0867
+ githash=5bcfde79c083d5c34f13f81fe578b4606a7cc80c
mkdir -p config/vcfanno
cd config/vcfanno
bcbio_baseurl=https://github.com/chapmanb/bcbio-nextgen/raw/$githash/config/vcfanno/
wget --no-check-certificate -O gemini.conf -c $bcbio_baseurl/hg38-gemini.conf
wget --no-check-certificate -O gemini.lua -c $bcbio_baseurl/hg38-gemini.lua
+ wget --no-check-certificate -O dbnsfp.conf -c $bcbio_baseurl/hg38-dbnsfp.conf
+ wget --no-check-certificate -O dbscsnv.conf -c $bcbio_baseurl/hg38-dbscsnv.conf
+
recipe_outfiles:
- config/vcfanno/gemini.lua
- config/vcfanno/gemini.conf
+ - config/vcfanno/dbnsfp.conf
+ - config/vcfanno/dbscsnv.conf

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