From a013254b38dc2bf7d9b885f0e3fa3f209cc3f462 Mon Sep 17 00:00:00 2001
From: charlesbreeze <charlesbreeze@users.noreply.github.com>
Date: Wed, 30 Nov 2016 15:37:22 +0000
Subject: [PATCH] Update index.pl

---
 webserver/cgi-bin/index.pl | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/webserver/cgi-bin/index.pl b/webserver/cgi-bin/index.pl
index ddcb144..0a6da07 100755
--- a/webserver/cgi-bin/index.pl
+++ b/webserver/cgi-bin/index.pl
@@ -1129,6 +1129,17 @@ sub print_about_page {
     <a href=\"https://iris.ucl.ac.uk/iris/browse/profile?upi=BECKX39\">Stephan Beck</a>:
     s.beck(at)ucl.ac.uk.",
     );
+    
+    print Template::content_box("Some of the papers that cite eFORGE",
+    "eFORGE application and methodology is described at length in the following article:",
+    "Breeze, C.E., Paul, D.S., van Dongen, J., Butcher, L.M., Ambrose, J.C., Barrett, J.E., Lowe, R., Rakyan, V.K., Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.-É., Bourque, G., Bergmann, A.K., Siebert, R., Vellenga, E., Saeed, S., Matarese, F., Martens, J.H.A., Stunnenberg, H.G., Teschendorff, A.E., Herrero, J., Birney, E., Dunham, I., Beck, S., 2016. eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data. <i>Cell Reports</i> 17, 2137–2150. <a href=\"http://www.cell.com/cell-reports/abstract/S2211-1247(16)31479-6\"> doi:10.1016/j.celrep.2016.10.059 </a>",
+    "In addition, as of 30th of November 2016, eFORGE has either been referenced or applied by the following publications (for an updated list of references, see <a href=\"https://scholar.google.com/scholar?cites=18094386522507730423&as_sdt=2005&sciodt=0,5&hl=en\"> Google Scholar </a>):",
+    "Stunnenberg, H.G., Abrignani, S., Adams, D., Almeida, M. de, Altucci, L., Amin, V., Amit, I., Antonarakis, S.E., Aparicio, S., Arima, T., Arrigoni, L., Arts, R., Asnafi, V., Badosa, M.E., Bae, J.-B., Bassler, K., Beck, S., Berkman, B., Bernstein, B.E., Bilenky, M., Bird, A., Bock, C., Boehm, B., Bourque, G., Breeze, C.E., et al. (2016). The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery. <i>Cell</i> 167, 1145–1149",
+    "Spurrell, C.H., Dickel, D.E., Visel, A., 2016. The Ties That Bind: Mapping the Dynamic Enhancer-Promoter Interactome. <i>Cell</i>167, 1163-1166. doi:10.1016/j.cell.2016.10.054",
+    "Lewis, J., Breeze, C.E., Charlesworth, J., Maclaren, O.J., and Cooper, J. (2016). Where next for the reproducibility agenda in computational biology? <i> BMC Syst. Biol.</i> 10, 52",
+    "Bartlett, T.E., Chindera, K., McDermott, J., Breeze, C.E., Cooke, W.R., Jones, A., Reisel, D., Karegodar, S.T., Arora, R., Beck, S., et al. (2016). Epigenetic reprogramming of fallopian tube fimbriae in BRCA mutation carriers defines early ovarian cancer evolution. <i> Nat. Commun.</i> 7, 11620.",
+    "van Dongen, J., Nivard, M.G., Willemsen, G., Hottenga, J.-J., Helmer, Q., Dolan, C.V., Ehli, E.A., Davies, G.E., van Iterson, M., Breeze, C.E., Beck, S., et al. (2016). Genetic and environmental influences interact with age and sex in shaping the human methylome. <i> Nat. Commun. </i> 7, 11115.",);
+    
     print_credits_box();
     print Template::end;
     exit(0);