From c68cacaf21f6cbfd5e7fd8a05334dcaea8561c04 Mon Sep 17 00:00:00 2001 From: charlesbreeze Date: Tue, 28 Feb 2017 13:34:00 -0800 Subject: [PATCH] Update index.pl --- webserver/cgi-bin/index.pl | 16 +++++++++++----- 1 file changed, 11 insertions(+), 5 deletions(-) diff --git a/webserver/cgi-bin/index.pl b/webserver/cgi-bin/index.pl index 0a6da07..f157aba 100755 --- a/webserver/cgi-bin/index.pl +++ b/webserver/cgi-bin/index.pl @@ -812,7 +812,7 @@ =head2 print_credits_box sub print_credits_box { print Template::content_box("Credits", "Breeze, C.E., Paul, D.S., van Dongen, J., Butcher, L.M., Ambrose, J.C., Barrett, J.E., Lowe, R., Rakyan, V.K., - Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.-É., Bourque, G., Bergmann, A.K., + Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.-E., Bourque, G., Bergmann, A.K., Siebert, R., Vellenga, E., Saeed, S., Matarese, F., Martens, J.H.A., Stunnenberg, H.G., Teschendorff, A.E., Herrero, J., Birney, E., Dunham, I., Beck, S., 2016. eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data. Cell Reports 17, 2137–2150. doi:10.1016/j.celrep.2016.10.059
", @@ -1132,10 +1132,16 @@ sub print_about_page { print Template::content_box("Some of the papers that cite eFORGE", "eFORGE application and methodology is described at length in the following article:", - "Breeze, C.E., Paul, D.S., van Dongen, J., Butcher, L.M., Ambrose, J.C., Barrett, J.E., Lowe, R., Rakyan, V.K., Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.-É., Bourque, G., Bergmann, A.K., Siebert, R., Vellenga, E., Saeed, S., Matarese, F., Martens, J.H.A., Stunnenberg, H.G., Teschendorff, A.E., Herrero, J., Birney, E., Dunham, I., Beck, S., 2016. eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data. Cell Reports 17, 2137–2150. doi:10.1016/j.celrep.2016.10.059 ", - "In addition, as of 30th of November 2016, eFORGE has either been referenced or applied by the following publications (for an updated list of references, see Google Scholar ):", - "Stunnenberg, H.G., Abrignani, S., Adams, D., Almeida, M. de, Altucci, L., Amin, V., Amit, I., Antonarakis, S.E., Aparicio, S., Arima, T., Arrigoni, L., Arts, R., Asnafi, V., Badosa, M.E., Bae, J.-B., Bassler, K., Beck, S., Berkman, B., Bernstein, B.E., Bilenky, M., Bird, A., Bock, C., Boehm, B., Bourque, G., Breeze, C.E., et al. (2016). The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery. Cell 167, 1145–1149", - "Spurrell, C.H., Dickel, D.E., Visel, A., 2016. The Ties That Bind: Mapping the Dynamic Enhancer-Promoter Interactome. Cell167, 1163-1166. doi:10.1016/j.cell.2016.10.054", + "Breeze, C.E., Paul, D.S., van Dongen, J., Butcher, L.M., Ambrose, J.C., Barrett, J.E., Lowe, R., Rakyan, V.K., Iotchkova, V., Frontini, M., Downes, K., Ouwehand, W.H., Laperle, J., Jacques, P.-E., Bourque, G., Bergmann, A.K., Siebert, R., Vellenga, E., Saeed, S., Matarese, F., Martens, J.H.A., Stunnenberg, H.G., Teschendorff, A.E., Herrero, J., Birney, E., Dunham, I., Beck, S., 2016. eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data. Cell Reports 17, 2137-2150. doi:10.1016/j.celrep.2016.10.059 ", + "In addition, as of 27th of February 2017, eFORGE has either been referenced or applied by the following publications (for an updated list of references, see Google Scholar):", + "Stunnenberg, H.G., Abrignani, S., Adams, D., Almeida, M. de, Altucci, L., Amin, V., Amit, I., Antonarakis, S.E., Aparicio, S., Arima, T., Arrigoni, L., Arts, R., Asnafi, V., Badosa, M.E., Bae, J.-B., Bassler, K., Beck, S., Berkman, B., Bernstein, B.E., Bilenky, M., Bird, A., Bock, C., Boehm, B., Bourque, G., Breeze, C.E., et al. (2016). The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery. Cell 167, 1145-1149", + "Spurrell, C.H., Dickel, D.E., Visel, A., 2016. The Ties That Bind: Mapping the Dynamic Enhancer-Promoter Interactome. Cell 167, 1163-1166.", + "Mendelson, M.M., Marioni, R.E., Joehanes, R., Liu, C., Hedman, Asa K., Aslibekyan, S., Demerath, E.W., Guan, W., Zhi, D., Yao, C., et al. (2017). Association of Body Mass Index with DNA Methylation and Gene Expression in Blood Cells and Relations to Cardiometabolic Disease: A Mendelian Randomization Approach. PLoS Med. 14, e1002215.", + "Bujold, D., de Lima Morais, D.A., Gauthier, C., Cote, C., Caron, M., Kwan, T., Chen, K.C., Laperle, J., Markovits, A.N., Pastinen, T., et al. (2016). The International Human Epigenome Consortium Data Portal. Cell Syst. 3, 496-499.", + "Johnson, K.C., Houseman, E.A., King, J.E., and Christensen, B.C. (2017). DNA methylation differences at regulatory elements are associated with the cancer risk factor age in normal breast tissue. bioRxiv 101287.", + "Li, Y., Xu, Q., Lv, N., Wang, L., Zhao, H., Wang, X., Guo, J., Chen, C., Li, Y., and Yu, L. (2017). Clinical implications of genome-wide DNA methylation studies in acute myeloid leukemia. J. Hematol. Oncol. 10, 41.", + "Ligthart, S., Marzi, C., Aslibekyan, S., Mendelson, M.M., Conneely, K.N., Tanaka, T., Colicino, E., Waite, L.L., Joehanes, R., Guan, W., et al. (2016). DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases. Genome Biol. 17, 255.", + "Rodger, E.J., and Chatterjee, A. (2017). The epigenomic basis of common diseases. Clin. Epigenetics 9, 5.", "Lewis, J., Breeze, C.E., Charlesworth, J., Maclaren, O.J., and Cooper, J. (2016). Where next for the reproducibility agenda in computational biology? BMC Syst. Biol. 10, 52", "Bartlett, T.E., Chindera, K., McDermott, J., Breeze, C.E., Cooke, W.R., Jones, A., Reisel, D., Karegodar, S.T., Arora, R., Beck, S., et al. (2016). Epigenetic reprogramming of fallopian tube fimbriae in BRCA mutation carriers defines early ovarian cancer evolution. Nat. Commun. 7, 11620.", "van Dongen, J., Nivard, M.G., Willemsen, G., Hottenga, J.-J., Helmer, Q., Dolan, C.V., Ehli, E.A., Davies, G.E., van Iterson, M., Breeze, C.E., Beck, S., et al. (2016). Genetic and environmental influences interact with age and sex in shaping the human methylome. Nat. Commun. 7, 11115.",);