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New example dataset works for 450k and 27k arrays
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21 additions
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12 deletions.
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eforge.pl
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webserver/cgi-bin/index.pl
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@@ -633,7 +633,7 @@ sub get_input_probes { |
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# Test MVPs from Liu Y et al. Nat Biotechnol 2013 Pulmonary_function.snps.bed (*put EWAS bedfile here)
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# If no options are given it will run on the default set of MVPs
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warn "No probe input given, so running on default set of probes, a set of monocyte tDMPs from Jaffe AE and Irizarry RA, Genome Biol 2014.";
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- @$probes = qw(cg13430807 cg10480329 cg06297318 cg19301114 cg23244761 cg26872907 cg18066690 cg04468741 cg16636767 cg10624395 cg20918393);
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+ @$probes = qw(cg00839584 cg02497428 cg02780988 cg03055440 cg05445326 cg10045881 cg11051139 cg11058932 cg12091331 cg12962778 cg16303562 cg16501235 cg18589858 cg18712919 cg18854666 cg21792432 cg22081096 cg25059899 cg26989103 cg27443224);
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}
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# Remove redundancy in the input
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@@ -229,17 +229,26 @@ sub print_form { |
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th(["<h6>Data</h6>", ""]),
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td(["Paste data:",
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textarea('data_text', '# Example with a filtered set of monocyte tDMPs from Jaffe AE and Irizarry RA, Genome Biol 2014, 15:R31.
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-cg13430807
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-cg10480329
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-cg06297318
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-cg19301114
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-cg23244761
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-cg26872907
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-cg18066690
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-cg04468741
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-cg16636767
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-cg10624395
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-cg20918393', 10, 60)]),
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+cg00839584
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+cg02497428
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+cg02780988
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+cg03055440
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+cg05445326
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+cg10045881
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+cg11051139
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+cg11058932
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+cg12091331
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+cg12962778
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+cg16303562
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+cg16501235
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+cg18589858
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+cg18712919
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+cg18854666
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+cg21792432
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+cg22081096
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+cg25059899
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+cg26989103
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+cg27443224', 10, 60)]),
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td(["",
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"<a href=\"javascript: void(0);\" onClick=\"document.getElementById('eforge').".
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"data_text.value ='';\">Clear box</a>"]),
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