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Commits on Jul 18, 2016

  1. Update eForge.pm 

    weights added to eForge.pm
    committed on GitHub Jul 18, 2016
    190f01f

  2. Update eforge.pl 

    weights added to main Perl script
    committed on GitHub Jul 18, 2016
    ae4dbe5
Commits on Nov 10, 2015
  1. @jherrero

    Change to relative paths

    jherrero committed Nov 10, 2015
    44950a4
Commits on Jul 6, 2015
  1. @jherrero

    Update INSTALL instructions

    jherrero committed Jul 6, 2015
    7d9bc4e
  2. @jherrero

    Support to deploy the webserver on any URL

    jherrero committed Jul 6, 2015
    330f3e4
Commits on May 22, 2015

  1. Change in label 

    Change in label in analysis strategy figure
    committed May 22, 2015
    a02d18b
Commits on May 7, 2015

  1. Update README

    committed May 7, 2015
    1359745

  2. Update README

    committed May 7, 2015
    9b3a97f
Commits on Mar 19, 2015
  1. @jherrero

    Update INSTALL

    jherrero committed Mar 19, 2015
    b9111dc
Commits on Mar 17, 2015
  1. @jherrero

    Use charlesbreeze repo instead of jherrero

    jherrero committed Mar 17, 2015
    ac45258
  2. @jherrero

    Update instructions for web install 

    Prefer to use a VirtualHost now.
    jherrero committed Mar 17, 2015
    afd6c9f
Commits on Mar 12, 2015
  1. @jherrero

    Increase fonts and contrast for readability

    jherrero committed Mar 12, 2015
    d95aa22
  2. @jherrero

    Increase fonts, parametrise dPlot size, reorder objects

    jherrero committed Mar 12, 2015
    0975fae
  3. @jherrero

    Add --autoopen options

    jherrero committed Mar 12, 2015
    4ba9bb4
  4. @jherrero

    Clean up code + Fix Bonferroni-by-tissue correction

    jherrero committed Mar 12, 2015
    1a13e9f
  5. @jherrero

    Adds title to the dPlot and change font to Arial

    jherrero committed Mar 12, 2015
    fc484b5
  6. @jherrero

    Keep p-value in natural scale and represent the -log10 in ePlot

    jherrero committed Mar 12, 2015
    0c5fbc9
  7. @jherrero

    Avoid using sed which behaves differently in Mac vs Linux

    jherrero committed Mar 12, 2015
    e68655b
  8. @jherrero

    New vertical lines + labels in dPlot

    jherrero committed Mar 12, 2015
    c2816df
  9. @jherrero

    Fix bug in zscore method

    jherrero committed Mar 12, 2015
    56d8a40
Commits on Mar 11, 2015
  1. @jherrero

    Use zscore method to get the zscore

    jherrero committed Mar 11, 2015
    029817a
  2. @jherrero

    Add zscore method

    jherrero committed Mar 11, 2015
    2146bab
  3. @jherrero

    Prettify the code, remove some legacy bits

    jherrero committed Mar 11, 2015
    a79735d
  4. @jherrero

    Clean up the code 

    - Use single quotes within double-quoted text
- Comment the R code
- Remove deprecated rPlot method
- Simplify the table method
- Other cosmetic fixes
    jherrero committed Mar 11, 2015
    f17389f
Commits on Mar 10, 2015
  1. @jherrero

    Fix last cosmetic change

    jherrero committed Mar 10, 2015
    eb333c3
  2. @jherrero

    Cosmetic change to avoid any overlap between the first cell and the l… 

    …egend
    jherrero committed Mar 10, 2015
    7a314d0
  3. @jherrero

    FDR correction + similar dPlot and PDF 

    The points are now colored according to the q-value instead. Also, the PDF output has changed
to be more similar to the dimple plot. The dimple plot now is also more similar to the PDF
as the cell lines/types are sorted in the same way and the break lines between tissues are
also shown.
    jherrero committed Mar 10, 2015
    cc7ea96
  4. @jherrero

    Adding B-Y FDR corrected q-values to output file

    jherrero committed Mar 10, 2015
    941cd02
Commits on Jan 29, 2015

  1. Merge pull request #12 from jherrero/master 

    Fix 27k platform label
    committed Jan 29, 2015
    963ceff
  2. @jherrero

    Fix 27k plpatform label

    jherrero committed Jan 29, 2015
    6d1f132

  3. Merge pull request #11 from jherrero/master 

    New update
    committed Jan 29, 2015
    6a18550
  4. @jherrero

    Add support for different background labels 

    The code is now a little smarter about checking that the background is valid and output the set of
available ones otherwise.
    jherrero committed Jan 29, 2015
    b7f61b1
Commits on Jan 16, 2015
  1. @jherrero

    Show error output in a text box for readability

    jherrero committed Jan 16, 2015
    45fe1dd
  2. @jherrero

    Change pod2usage to die call when too few MVPs

    jherrero committed Jan 16, 2015
    89ef0cf
  3. @jherrero

    Correct the HTML output when an error occurs 

    Both stdout and stderr are redirected to the outut file. Show its content in the Error message.
    jherrero committed Jan 16, 2015
    4a75f71