charlesbreeze/eFORGE

More updates on the list of papers that cite eFORGE

Fix the references

Fix reference pages and DOI URL

Revert "Update index.pl" …

This reverts commit c68caca to permit cherry-picking the changes from eforge.v1.2 branch

New example dataset works for 450k and 27k arrays

Fix buglet: don't count excluded probes as missing

Rename bkgdstats and related variables for cleaner code

Even more code cleanup

More code cleanup

Use shorter description for proximity filter

Fix proxy_filter_info table: logic only supports one filter per array

Clean up the code

Merge branch 'eforge.v1.2' …

Get the master branch back in sync with the latest developments.

Include 27k array

Include 27k array

Fix DB name to be for eFORGE v1.2

Close CVS file

Use compressed files to save space on the server

Use the full URL for R libs …

This allows the user to download the file and use the interactive table or chart.

Fix some typos

Fixing deployment instructions for v1.2

More changes for v1.2

Adding blueprint data for eforge v1.2

Fix mixup between strict and marginal thresholds of significance. Als… …

…o fixes pink color on dChart

Fix buglet: PDF was always showing default thresholds in the legend

Fix DOCUMENT_ROOT for v1.1

Change file to UNIX file format

Update AUTHORS

Use SQL query compatible with old RDBM

Information and files to rebuild the DB from scratch

New DB schema - both code and DB are data-agnostic

Copyright and authorship

Move SQL for fetching probe_id from location to eForge.pm

Fix bug about remaining variable

Fix legacy from FORGE in process_file and fetch_rsid (now called fetc… …

…h_probe_id)