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Update to version 1.2.4

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1 parent 0e17828 commit 6b786b11387e974443ef6c1edb698894bb2a7df5 @cheeyeelim committed Sep 17, 2016
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34 DESCRIPTION
@@ -1,31 +1,21 @@
Package: BTR Package: BTR
Type: Package Type: Package
-Title: Tools For Training and Analysing Asynchronous Boolean Models +Title: Training and Analysing Asynchronous Boolean Models
-Version: 1.2.2 +Version: 1.2.4
-Date: 2015-10-22 +Date: 2016-9-13
Author: Chee Yee Lim Author: Chee Yee Lim
Maintainer: Chee Yee Lim <cyl49@cam.ac.uk> Maintainer: Chee Yee Lim <cyl49@cam.ac.uk>
-Description: This package contains tools for inferring asynchronous Boolean +Description: Tools for inferring asynchronous Boolean
models from single-cell expression data. models from single-cell expression data.
-Depends: +Depends: R (>= 3.0.3), methods
- R (>= 3.0.3), +Imports: parallel, Rcpp (>= 0.11.4), foreach (>= 1.4.1), doParallel (>=
- methods + 1.0.8), poweRlaw (>= 0.30.0), diptest (>= 0.75-7), igraph (>=
-Imports: + 1.0.1), infotheo (>= 1.2.0), entropy (>= 1.2.1)
- parallel,
- Rcpp (>= 0.11.4),
- foreach (>= 1.4.1),
- doParallel (>= 1.0.8),
- poweRlaw (>= 0.30.0),
- diptest (>= 0.75-7),
- igraph (>= 1.0.1),
- infotheo (>= 1.2.0),
- entropy (>= 1.2.1)
LinkingTo: Rcpp LinkingTo: Rcpp
License: GPL-3 License: GPL-3
LazyData: true LazyData: true
-Suggests: +Suggests: bnlearn (>= 3.8.1), knitr, rmarkdown
- bnlearn (>= 3.8.1), +VignetteBuilder: knitr, rmarkdown
- knitr,
- rmarkdown
-VignetteBuilder: knitr
RoxygenNote: 5.0.1 RoxygenNote: 5.0.1
+NeedsCompilation: yes
+Packaged: 2016-09-17 10:17:03 UTC; cylim
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675 LICENSE

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8 NAMESPACE
@@ -36,4 +36,12 @@ import(methods)
import(parallel) import(parallel)
importFrom(Rcpp,evalCpp) importFrom(Rcpp,evalCpp)
importFrom(Rcpp,sourceCpp) importFrom(Rcpp,sourceCpp)
+importFrom(grDevices,rgb)
+importFrom(stats,aggregate)
+importFrom(stats,kmeans)
+importFrom(stats,median)
+importFrom(stats,rbinom)
+importFrom(stats,runif)
+importFrom(utils,combn)
+importFrom(utils,write.csv)
useDynLib(BTR) useDynLib(BTR)
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2 R/RcppExports.R
@@ -1,4 +1,4 @@
-# This file was generated by Rcpp::compileAttributes +# Generated by using Rcpp::compileAttributes() -> do not edit by hand
# Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393 # Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393
#' @title Calculating validation scores between two adjacency matrices #' @title Calculating validation scores between two adjacency matrices
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41 R/btr.R
@@ -1,19 +1,24 @@
-#' @title BTR: A package for studying asynchronous Boolean models +#' @title BTR: A package for studying asynchronous Boolean models
-#' +#'
-#' @description +#' @description
-#' This package contains tools for Boolean model manipulation, as well as the search for the best Boolean model. +#' This package contains tools for Boolean model manipulation, as well as the search for the best Boolean model.
-#' +#'
-#' @docType package +#' @docType package
-#' @name BTR +#' @name BTR
-NULL +NULL
- +
-## All the Roxygen codes below are for generating the correct NAMESPACE file. +## All the Roxygen codes below are for generating the correct NAMESPACE file.
-#' @import methods +#' @import methods
-#' @import parallel +#' @import parallel
-#' @import foreach +#' @import foreach
-#' @import doParallel +#' @import doParallel
-NULL +NULL
- +
-#' @useDynLib BTR +#' @useDynLib BTR
-#' @importFrom Rcpp sourceCpp evalCpp +#' @importFrom Rcpp sourceCpp evalCpp
+NULL
+
+#' @importFrom grDevices rgb
+#' @importFrom stats aggregate kmeans median rbinom runif
+#' @importFrom utils combn write.csv
NULL NULL
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