conda create -n scTIGER python=3.9.2 conda activate scTIGER conda install pytorch==2.1.2 torchvision==0.16.2 torchaudio==2.1.2 cpuonly==2.0 conda-forge::fsspec -c pytorch pip install pandas==1.4.3 matplotlib==3.8.2 networkx==3.1 argparse==1.4.0 scipy==1.11.4 scanpy==1.9.6 leidenalg==0.10.1 bambi==0.9.0 arviz==0.16.1 pyarrow numba==0.56.4 export MKL_THREADING_LAYER=GNU conda install numpy==1.22.0 # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge aeppl 0.0.31 pypi_0 pypi aesara 2.6.6 pypi_0 pypi anndata 0.10.5.post1 pypi_0 pypi argparse 1.4.0 pypi_0 pypi array-api-compat 1.6 pypi_0 pypi arviz 0.16.1 pypi_0 pypi bambi 0.9.0 pypi_0 pypi blas 1.0 mkl conda-forge brotli-python 1.1.0 py39h3d6467e_1 conda-forge bzip2 1.0.8 hd590300_5 conda-forge ca-certificates 2024.2.2 hbcca054_0 conda-forge cachetools 5.3.3 pypi_0 pypi certifi 2024.2.2 pyhd8ed1ab_0 conda-forge charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge cloudpickle 3.0.0 pypi_0 pypi cons 0.4.6 pypi_0 pypi contourpy 1.2.1 pypi_0 pypi cpuonly 2.0 0 pytorch cycler 0.12.1 pypi_0 pypi etuples 0.3.9 pypi_0 pypi exceptiongroup 1.2.1 pypi_0 pypi fastprogress 1.0.3 pypi_0 pypi ffmpeg 4.3 hf484d3e_0 pytorch filelock 3.13.4 pyhd8ed1ab_0 conda-forge fonttools 4.51.0 pypi_0 pypi formulae 0.3.4 pypi_0 pypi freetype 2.12.1 h267a509_2 conda-forge fsspec 2024.3.1 pyhca7485f_0 conda-forge get-annotations 0.1.2 pypi_0 pypi gmp 6.3.0 h59595ed_1 conda-forge gmpy2 2.1.5 py39h03b5d36_0 conda-forge gnutls 3.6.13 h85f3911_1 conda-forge h5netcdf 1.3.0 pypi_0 pypi h5py 3.11.0 pypi_0 pypi icu 73.2 h59595ed_0 conda-forge idna 3.7 pyhd8ed1ab_0 conda-forge igraph 0.10.8 pypi_0 pypi importlib-resources 6.4.0 pypi_0 pypi intel-openmp 2023.1.0 hdb19cb5_46306 jinja2 3.1.3 pyhd8ed1ab_0 conda-forge joblib 1.4.0 pypi_0 pypi jpeg 9e h166bdaf_2 conda-forge kiwisolver 1.4.5 pypi_0 pypi lame 3.100 h166bdaf_1003 conda-forge lcms2 2.15 hfd0df8a_0 conda-forge ld_impl_linux-64 2.40 h55db66e_0 conda-forge leidenalg 0.10.1 pypi_0 pypi lerc 4.0.0 h27087fc_0 conda-forge libblas 3.9.0 1_h86c2bf4_netlib conda-forge libcblas 3.9.0 5_h92ddd45_netlib conda-forge libdeflate 1.17 h0b41bf4_0 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 13.2.0 hc881cc4_6 conda-forge libgfortran-ng 13.2.0 h69a702a_6 conda-forge libgfortran5 13.2.0 h43f5ff8_6 conda-forge libgomp 13.2.0 hc881cc4_6 conda-forge libhwloc 2.10.0 default_h2fb2949_1000 conda-forge libiconv 1.17 hd590300_2 conda-forge libjpeg-turbo 2.0.0 h9bf148f_0 pytorch liblapack 3.9.0 5_h92ddd45_netlib conda-forge libnsl 2.0.1 hd590300_0 conda-forge libpng 1.6.43 h2797004_0 conda-forge libsqlite 3.45.3 h2797004_0 conda-forge libstdcxx-ng 13.2.0 h95c4c6d_6 conda-forge libtiff 4.5.0 h6adf6a1_2 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libwebp-base 1.4.0 hd590300_0 conda-forge libxcb 1.13 h7f98852_1004 conda-forge libxcrypt 4.4.36 hd590300_1 conda-forge libxml2 2.12.6 h232c23b_2 conda-forge libzlib 1.2.13 hd590300_5 conda-forge llvm-openmp 15.0.7 h0cdce71_0 conda-forge llvmlite 0.39.1 pypi_0 pypi logical-unification 0.4.6 pypi_0 pypi markupsafe 2.1.5 py39hd1e30aa_0 conda-forge matplotlib 3.8.2 pypi_0 pypi minikanren 1.0.3 pypi_0 pypi mkl 2023.1.0 h213fc3f_46344 mpc 1.3.1 hfe3b2da_0 conda-forge mpfr 4.2.1 h9458935_1 conda-forge mpmath 1.3.0 pyhd8ed1ab_0 conda-forge multipledispatch 1.0.0 pypi_0 pypi natsort 8.4.0 pypi_0 pypi ncurses 6.4.20240210 h59595ed_0 conda-forge nettle 3.6 he412f7d_0 conda-forge networkx 3.1 pypi_0 pypi numba 0.56.4 pypi_0 pypi numpy 1.21.6 pypi_0 pypi openh264 2.1.1 h780b84a_0 conda-forge openjpeg 2.5.0 hfec8fc6_2 conda-forge openssl 3.2.1 hd590300_1 conda-forge packaging 24.0 pypi_0 pypi pandas 1.4.3 pypi_0 pypi patsy 0.5.6 pypi_0 pypi pillow 9.4.0 py39h2320bf1_1 conda-forge pip 24.0 pyhd8ed1ab_0 conda-forge pthread-stubs 0.4 h36c2ea0_1001 conda-forge pyarrow 16.0.0 pypi_0 pypi pymc 4.0.0 pypi_0 pypi pynndescent 0.5.12 pypi_0 pypi pyparsing 3.1.2 pypi_0 pypi pysocks 1.7.1 pyha2e5f31_6 conda-forge python 3.9.19 h0755675_0_cpython conda-forge python-dateutil 2.9.0.post0 pypi_0 pypi python_abi 3.9 4_cp39 conda-forge pytorch 2.1.2 py3.9_cpu_0 pytorch pytorch-mutex 1.0 cpu pytorch pytz 2024.1 pypi_0 pypi pyyaml 6.0.1 py39hd1e30aa_1 conda-forge readline 8.2 h8228510_1 conda-forge requests 2.31.0 pyhd8ed1ab_0 conda-forge scanpy 1.9.6 pypi_0 pypi scikit-learn 1.4.2 pypi_0 pypi scipy 1.11.4 pypi_0 pypi seaborn 0.13.2 pypi_0 pypi session-info 1.0.0 pypi_0 pypi setuptools 69.5.1 pyhd8ed1ab_0 conda-forge six 1.16.0 pypi_0 pypi sqlite 3.45.3 h2c6b66d_0 conda-forge statsmodels 0.14.1 pypi_0 pypi stdlib-list 0.10.0 pypi_0 pypi sympy 1.12 pypyh9d50eac_103 conda-forge tbb 2021.12.0 h00ab1b0_0 conda-forge texttable 1.7.0 pypi_0 pypi threadpoolctl 3.5.0 pypi_0 pypi tk 8.6.13 noxft_h4845f30_101 conda-forge toolz 0.12.1 pypi_0 pypi torchaudio 2.1.2 py39_cpu pytorch torchvision 0.16.2 py39_cpu pytorch tqdm 4.66.2 pypi_0 pypi typing_extensions 4.11.0 pyha770c72_0 conda-forge tzdata 2024a h0c530f3_0 conda-forge umap-learn 0.5.6 pypi_0 pypi urllib3 2.2.1 pyhd8ed1ab_0 conda-forge wheel 0.43.0 pyhd8ed1ab_1 conda-forge xarray 2023.10.0 pypi_0 pypi xarray-einstats 0.6.0 pypi_0 pypi xorg-libxau 1.0.11 hd590300_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge zipp 3.18.1 pypi_0 pypi zlib 1.2.13 hd590300_5 conda-forge zstd 1.5.5 hfc55251_0 conda-forge