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Image Pipe

Pipeline building solution for 4D biological microscopy

Description:

This project is still in development. Initially started as a tool for Ruan, Zhou et al, Nature 2017, this pipeline has since grown to allow arbitrary pipeline construction based on a set of primitive functions and abstractions (pipe, tiling, per-segment processing, etc...).

This project is currently in alpha development, hence poorly documented, sparsely tested and prone to rapid changes.

Basic installation:

> pip install imagepipe

or:

> pip install git+https://github.com/chiffa/Image_pipe.git

The documentation is available on readthedocs.

Project is housed at GitHub. For any issues please refer to GitHub issue tracker.

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Pipeline building solution for 4D biological microscopy

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