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This project contains scripts,source codes, documents, etc. associated with the AMPssembler Project.
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adapters
AMPssembler.py
README.txt
Test_input.txt
Test_output.fastq
Tn5_analysis_master_v2.py
combine_identicals_cluster.py
cout_coverage.py
index_reads_IGH_Tn5_AB_fuzzy.py Fixed AMPssembler bug Jul 25, 2017
index_reads_IGH_Tn5_Uncut.py
index_reads_IGH_Tn5_Uncut_fuzzy.py Fixed AMPssembler bug Jul 25, 2017
run_igblast.py Added additional scripts Jul 25, 2017

README.txt

The purpose of this program is to reconstitute complete barcoded cDNA transcripts from a mixture of sequenced libraries.
The Program works by collecting all reads associated with a single barcoded cDNA, creating high quality ends through
sequence consensus and then extending those ends with kmers until the other end is reached.
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