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branch: master

Jan 12, 2011

  1. Chase Miller

    Fixed error in readme usage

    authored January 12, 2011
  2. Chase Miller

    Regenerate gemspec for version 0.1.0

    authored January 12, 2011
  3. Chase Miller

    fixed error with gemspec

    authored January 12, 2011
  4. Chase Miller

    Merge branch 'master' of git@github.com:chmille4/bioruby-assembly

    Conflicts:
    	bio-assembly.gemspec
    authored January 12, 2011
  5. Chase Miller

    Regenerate gemspec for version 0.1.0

    authored January 12, 2011
  6. Chase Miller

    Regenerate gemspec for version 0.1.0

    authored January 12, 2011
  7. Chase Miller

    Regenerate gemspec for version 0.0.2

    authored January 12, 2011
  8. Chase Miller

    fixed problem with versioning

    authored January 12, 2011
  9. Chase Miller

    Regenerate gemspec for version

    authored January 12, 2011
  10. Chase Miller

    Merge branch 'fstrozzi-master'

    authored January 12, 2011
  11. Francesco Strozzi

    removed all the start_with methods from caf.rb

    authored January 12, 2011
  12. Chase Miller

    added usage in readme

    authored January 12, 2011
  13. Chase Miller

    added francesco to license

    authored January 12, 2011
  14. Chase Miller

    updated version

    authored January 12, 2011
  15. Francesco Strozzi

    fixed CAF parser to be Ruby 1.8.6 compatible

    authored January 12, 2011
  16. Francesco Strozzi

    added comments in caf.rb

    authored January 12, 2011
  17. Francesco Strozzi

    added tests to verify Contigs and Reads class type

    authored January 12, 2011
  18. Francesco Strozzi

    fixed README

    authored January 12, 2011
  19. Francesco Strozzi

    put 'TO DO' for MAF parser

    authored January 12, 2011
  20. Francesco Strozzi

    added tests for Contig#seq and Read#seq

    authored January 12, 2011
  21. Francesco Strozzi

    fixed quality parsing

    authored January 12, 2011
  22. Francesco Strozzi

    created tests for CAF parser

    authored January 12, 2011
  23. Francesco Strozzi

    fixed @seq accessor method to always use Bio::Sequence::NA

    authored January 12, 2011
  24. Francesco Strozzi

    fixed wrong BaseSequence instance

    authored January 12, 2011
  25. Francesco Strozzi

    fixed copyrights

    authored January 12, 2011
  26. Francesco Strozzi

    modifed tests for Ace

    authored January 12, 2011
  27. Francesco Strozzi

    fixed few things in readme and gem files

    authored January 12, 2011
  28. Francesco Strozzi

    added the CAF parser

    authored January 12, 2011
  29. Francesco Strozzi

    modified Contig and Read classes in Ace

    authored January 12, 2011
  30. Francesco Strozzi

    removed @contigs from Bio::Assembly::Contig class

    authored January 12, 2011

Jan 06, 2011

  1. Francesco Strozzi

    basic scaffold for Caf and Maf parsers

    authored January 06, 2011
  2. Francesco Strozzi

    fixed two tests that used @contigs

    authored January 06, 2011
  3. Francesco Strozzi

    removed the @contigs array within the parser to lower memory usage

    authored January 06, 2011

Dec 28, 2010

  1. Chase Miller

    Regenerate gemspec for version 0.0.2

    authored December 27, 2010
  2. Chase Miller

    fixed description

    authored December 27, 2010
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