Chocolate-Doom's emulation may be fine with the EAWPATS GUS patches and the GUS401 patches (distributed as dgguspat.zip on idgames), but it's broken with the PPL160 patches. (I didn't test with other patches, these are the one that I always use with DOSBox because others suck, so the problem may affect other sets of patches)
This affects both Doom 1 and Doom 2, but Doom 2 seems to be affected more (maybe because of changes to the DMXGUS lump). Map01's music sounds like if it was on the Jaguar 32X.
If you don't have the PPL160 patches, grab them here:
http://www.mediafire.com/file/8mezjdsyuj3/GUS+Install.7z