##fileformat=VCFv4.1
##fileDate=20221119
##source=freeBayes v1.0.2
##reference=reference.fasta
##phasing=none
##filter="AB > 0.2 & AB < 0.8 | AB < 0.01 | AB > 0.99 genotypes filtered with: QR > 0 | QA > 0 "
##filter="QUAL / DP > 0.1"
##filter="MQM / MQMR > 0.25 & MQM / MQMR < 1.75"
##filter="PAIRED > 0.05 & PAIREDR > 0.05 & PAIREDR / PAIRED < 1.75 & PAIREDR / PAIRED > 0.25 | PAIRED < 0.05 & PAIREDR < 0.05"
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
##INFO=<ID=DPB,Number=1,Type=Float,Description="Total read depth per bp at the locus; bases in reads overlapping / bases in haplotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]">
##INFO=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=PRO,Number=1,Type=Float,Description="Reference allele observation count, with partial observations recorded fractionally">
##INFO=<ID=PAO,Number=A,Type=Float,Description="Alternate allele observations, with partial observations recorded fractionally">
##INFO=<ID=QR,Number=1,Type=Integer,Description="Reference allele quality sum in phred">
##INFO=<ID=QA,Number=A,Type=Integer,Description="Alternate allele quality sum in phred">
##INFO=<ID=PQR,Number=1,Type=Float,Description="Reference allele quality sum in phred for partial observations">
##INFO=<ID=PQA,Number=A,Type=Float,Description="Alternate allele quality sum in phred for partial observations">
##INFO=<ID=SRF,Number=1,Type=Integer,Description="Number of reference observations on the forward strand">
##INFO=<ID=SRR,Number=1,Type=Integer,Description="Number of reference observations on the reverse strand">
##INFO=<ID=SAF,Number=A,Type=Integer,Description="Number of alternate observations on the forward strand">
##INFO=<ID=SAR,Number=A,Type=Integer,Description="Number of alternate observations on the reverse strand">
##INFO=<ID=SRP,Number=1,Type=Float,Description="Strand balance probability for the reference allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SRF and SRR given E(SRF/SRR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=SAP,Number=A,Type=Float,Description="Strand balance probability for the alternate allele: Phred-scaled upper-bounds estimate of the probability of observing the deviation between SAF and SAR given E(SAF/SAR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=AB,Number=A,Type=Float,Description="Allele balance at heterozygous sites: a number between 0 and 1 representing the ratio of reads showing the reference allele to all reads, considering only reads from individuals called as heterozygous">
##INFO=<ID=ABP,Number=A,Type=Float,Description="Allele balance probability at heterozygous sites: Phred-scaled upper-bounds estimate of the probability of observing the deviation between ABR and ABA given E(ABR/ABA) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RUN,Number=A,Type=Integer,Description="Run length: the number of consecutive repeats of the alternate allele in the reference genome">
##INFO=<ID=RPP,Number=A,Type=Float,Description="Read Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPPR,Number=1,Type=Float,Description="Read Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between RPL and RPR given E(RPL/RPR) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=RPL,Number=A,Type=Float,Description="Reads Placed Left: number of reads supporting the alternate balanced to the left (5') of the alternate allele">
##INFO=<ID=RPR,Number=A,Type=Float,Description="Reads Placed Right: number of reads supporting the alternate balanced to the right (3') of the alternate allele">
##INFO=<ID=EPP,Number=A,Type=Float,Description="End Placement Probability: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=EPPR,Number=1,Type=Float,Description="End Placement Probability for reference observations: Phred-scaled upper-bounds estimate of the probability of observing the deviation between EL and ER given E(EL/ER) ~ 0.5, derived using Hoeffding's inequality">
##INFO=<ID=DPRA,Number=A,Type=Float,Description="Alternate allele depth ratio.  Ratio between depth in samples with each called alternate allele and those without.">
##INFO=<ID=ODDS,Number=1,Type=Float,Description="The log odds ratio of the best genotype combination to the second-best.">
##INFO=<ID=GTI,Number=1,Type=Integer,Description="Number of genotyping iterations required to reach convergence or bailout.">
##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex.">
##INFO=<ID=CIGAR,Number=A,Type=String,Description="The extended CIGAR representation of each alternate allele, with the exception that '=' is replaced by 'M' to ease VCF parsing.  Note that INDEL alleles do not have the first matched base (which is provided by default, per the spec) referred to by the CIGAR.">
##INFO=<ID=NUMALT,Number=1,Type=Integer,Description="Number of unique non-reference alleles in called genotypes at this position.">
##INFO=<ID=MEANALT,Number=A,Type=Float,Description="Mean number of unique non-reference allele observations per sample with the corresponding alternate alleles.">
##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length">
##INFO=<ID=MQM,Number=A,Type=Float,Description="Mean mapping quality of observed alternate alleles">
##INFO=<ID=MQMR,Number=1,Type=Float,Description="Mean mapping quality of observed reference alleles">
##INFO=<ID=PAIRED,Number=A,Type=Float,Description="Proportion of observed alternate alleles which are supported by properly paired read fragments">
##INFO=<ID=PAIREDR,Number=1,Type=Float,Description="Proportion of observed reference alleles which are supported by properly paired read fragments">
##INFO=<ID=MIN,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
##INFO=<ID=END,Number=1,Type=Integer,Description="Last position (inclusive) in gVCF output record.">
##INFO=<ID=technology.Illumina,Number=A,Type=Float,Description="Fraction of observations supporting the alternate observed in reads from Illumina">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood, log10-scaled likelihoods of the data given the called genotype for each possible genotype generated from the reference and alternate alleles given the sample ploidy">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=RO,Number=1,Type=Integer,Description="Reference allele observation count">
##FORMAT=<ID=QR,Number=1,Type=Integer,Description="Sum of quality of the reference observations">
##FORMAT=<ID=AO,Number=A,Type=Integer,Description="Alternate allele observation count">
##FORMAT=<ID=QA,Number=A,Type=Integer,Description="Sum of quality of the alternate observations">
##FORMAT=<ID=MIN,Number=1,Type=Integer,Description="Minimum depth in gVCF output block.">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	GS_3324	GS_3324R	GS_9715	GS_9715R	GSL_100	GSL_101	GSL_102	GSL_103	GSL_104	GSL_105	GSL_106	GSL_107	GSL_108	GSL_109	GSL_110	GSL_111	GSL_112	GSL_115	GSL_117	GSL_119	GSL_120	GSL_121	GSL_122	GSL_123	GSL_125	GSL_126	GSL_127	GSL_128	GSL_129	GSL_131	GSL_132	GSL_133	GSL_134	GSL_135	GSL_136	GSL_137	GSL_138	GSL_139	GSL_140	GSL_141	GSL_142	GSL_143	GSL_144	GSL_145	GSL_146	GSL_147	GSL_148	GSL_149	GSL_150	GSL_151	GSL_152	GSL_153	GSL_154	GSL_155	GSL_156	GSL_157	GSL_158	GSL_159	GSL_160	GSL_161	GSL_162	GSL_163	GSL_164	GSL_165	GSL_166	GSL_167	GSL_168	GSL_169	GSL_170	GSL_171	GSL_172	GSL_173	GSL_174	GSL_175	GSL_176	GSL_177	GSL_178	GSL_179	GSL_17	GSL_180	GSL_181	GSL_182	GSL_183	GSL_184	GSL_185	GSL_186	GSL_187	GSL_188	GSL_189	GSL_18	GSL_190	GSL_191	GSL_192	GSL_193	GSL_194	GSL_195	GSL_196	GSL_197	GSL_198	GSL_199	GSL_19	GSL_200	GSL_201	GSL_202	GSL_203	GSL_204	GSL_205	GSL_206	GSL_207	GSL_208	GSL_209	GSL_20	GSL_211	GSL_212	GSL_213	GSL_214	GSL_215	GSL_216	GSL_217	GSL_218	GSL_219	GSL_220	GSL_222	GSL_226	GSL_230	GSL_235	GSL_236	GSL_238	GSL_246	GSL_247	GSL_248	GSL_249	GSL_251	GSL_252	GSL_254	GSL_255	GSL_256	GSL_259	GSL_260	GSL_261	GSL_29	GSL_30	GSL_318	GSL_319	GSL_31	GSL_320	GSL_321	GSL_325	GSL_326	GSL_328	GSL_32	GSL_330	GSL_331	GSL_332	GSL_334	GSL_335	GSL_33	GSL_342	GSL_343	GSL_345	GSL_346	GSL_347	GSL_348	GSL_349	GSL_350	GSL_351	GSL_352	GSL_355	GSL_357	GSL_358	GSL_359	GSL_35	GSL_361	GSL_369	GSL_36	GSL_370	GSL_371	GSL_372	GSL_374	GSL_375	GSL_376	GSL_37	GSL_38	GSL_3	GSL_40	GSL_41	GSL_42	GSL_43	GSL_44	GSL_45	GSL_46	GSL_47	GSL_48	GSL_49	GSL_50	GSL_51	GSL_52	GSL_53	GSL_54	GSL_55	GSL_56	GSL_57	GSL_58	GSL_59	GSL_60	GSL_61	GSL_62	GSL_64	GSL_65	GSL_66	GSL_67	GSL_68	GSL_69	GSL_70	GSL_71	GSL_72	GSL_73	GSL_74	GSL_75	GSL_76	GSL_77	GSL_78	GSL_79	GSL_80	GSL_81	GSL_82	GSL_83	GSL_84	GSL_85	GSL_86	GSL_87	GSL_88	GSL_89	GSL_90	GSL_91	GSL_92	GSL_93	GSL_94	GSL_95	GSL_96	GSL_97	GSL_99