stats

Standalone functions for calculating binomial, Hardy-Weinberg equilibrium, and Fisher 2x2/2x3 exact test statistics.

Test program compilation:

gcc -O2 binom.c binom_test.c -o binom_test

gcc -O2 snphwe2.c snphwe_test.c -o snphwe_test

gcc -O2 fisher.c fisher_test.c -o fisher_test

Test program usage examples:

binom_test binom_test.txt

binom_test 2900 5000 0.52

snphwe_test snphwe_test.txt

snphwe_test 16 3 81

fisher_test fisher_test.txt

fisher_test 20 30 40 50 60 70

binom.c and fisher.c are covered by GPLv3 (see the LICENSE file). For snphwe2.c usage rules, refer to the Abecasis Lab's SNP-HWE page at http://sph.umich.edu/csg/abecasis/Exact .