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Pouzat-ENP-2015.ipynb
Pouzat-ENP-2015.org
Pouzat-ENP-2016-C.html
Pouzat-ENP-2016-C.org
README.md
VvsM.png
zerosept_vanVliet1998F3.png

README.md

Material related to the course: "Fluorescence Imaging Analysis: The Case of Calcium Transients" given at the ENP summer school on June 17 2015

In addition to this README file there are three interesting files here:

  1. Pouzat-ENP-2015.org, the org source file. It contains the text of the slides and the code generating all the figures except one. The code part is now mostly documented. Python is used for the analysis. The file is a pure UTF-8 file and can be opened with any editor. The text and code parts are straightforward to identify.
  2. Pouzat-ENP-2015.ipynb, the IPython notebook with the same content as the org file. This notebok can be visualized with nbviewer.
  3. zerosept_vanVliet1998F3.png, the only figure that is not generated by a computation. It is taken from: L. van Vliet et col. (1998) Digital Fluorescence Imaging Using Cooled CCD Array Cameras (figure 3).

The file of the course iteself is available on zenodo: 10.5281/zenodo.18691.