Material related to the course: "Fluorescence Imaging Analysis: The Case of Calcium Transients" given at the ENP summer school on June 17 2015
In addition to this README file there are three interesting files here:
Pouzat-ENP-2015.org, the org source file. It contains the text of the slides and the code generating all the figures except one. The code part is now mostly documented.
Pythonis used for the analysis. The file is a pure
UTF-8file and can be opened with any editor. The text and code parts are straightforward to identify.
Pouzat-ENP-2015.ipynb, the IPython notebook with the same content as the
orgfile. This notebok can be visualized with nbviewer.
zerosept_vanVliet1998F3.png, the only figure that is not generated by a computation. It is taken from: L. van Vliet et col. (1998) Digital Fluorescence Imaging Using Cooled CCD Array Cameras (figure 3).