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MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRI data
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README.md
group_preprocess.sh
group_tractography.sh
subject_preprocess.sh
subject_tractography.sh

README.md

HCP-dMRI-connetome

MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRI data

group_preprocess - unpack and pre-process the already "minimally preprocessed" diffusion MRI datasets of the HCP. Intended to be run on a workstation.

group_tractography - construct tractograms for all the subjects that were pre-processed. To speed up processing, the tractograms are being constructed in parallel. Intended to be run on a HPC system with a SLURM job scheduler.

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