LDsim

An R/shiny simulation app for teaching linkage disequilibrium.

For less than 10 users a web version is available at https://cjbattey.shinyapps.io/LDsim/ .

For larger classes I recommend running locally by pasting the following code into an R console.

 pkgs <- c("plyr","ggplot2","shiny","cowplot","reshape")
 dl_pkgs <- subset(pkgs,!pkgs %in% rownames(installed.packages()))
 if(length(dl_pkgs)!=0){
   for(i in dl_pkgs) install.packages(i)
 }
 library(shiny)
 runGitHub(username="cjbattey",repo="LDsim")

This software is free for use or modification under the GNU General Public License 3.0 (https://opensource.org/licenses/GPL-3.0)