…ed get_Annotations method. Added tagname method and attribute for DBLink.pm. Uncommented more tests
…d to override it. Initial implementation of Comment and Reference Annotation classes. Just enough to get test passing. Added more tests
… basic tests as well.
…ng test file.
…ribute 'description'. Added a test.
…ame: id and display_id. Allowed in constructor both 'id' and 'display_id' to both initalize $!id. Same with 'desc' and 'description'
… and created getter/setter for seq attribute
… method. Fixed a bug where $min and $max would be initialized as match object and not integer. This causes issue where type constraints in method signature in Subseq. Passing the last test for PrimarySeq.t
…assing a few more test
…y for subseq
…g Test file. Beat that!
…created two aliases for name: info and seqname.
…/end. Implemented start method as well
…f coordinate_policy. Added a few more tests
…d Location and end methods. 5 more tests were created.
…Tstring. Added tests for low,high and to_FTstring
…ead of array reference of start/stop coordinates. Also ensure that they keep their own type
…ndle segments in new constructor. Implemented add_segments,segments,seq_id,phase and class methods. Most will probably go away since they are simple getter/setter methods. Added more tests.
… bond in $sub section. Implemented a few more simple function in Lite.pm with corresponding tests
…sing one more test
…ew attribute that are public and rw.
… otherwise we have issue farther down the line. Passing all the tests but 2.
… for 'AFTER' in fuzzypointdecode. Passing more tests