reimplementation of BioPerl classes in Perl6
An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
Repository for CWL Specifications. Use https://www.biostars.org/t/cwl/ for support.
A reimplementation of BioPerl's Primer3-related code for primer3 v1 and v2
GenomeDiff (*.gd) file parser for Python
Lexical loading bug?
Bcrypt password hashing in Perl6
Scripts to migrate redmine tickets to github issues
Plos in Computational Biology paper related with github for researchers, code, source and document
Source for the CPAN Bio::DB::HTS module. Perl adaptors into the HTSlib library.
Perl6 binding to samtools
An experimental Moose-based BioPerl implementation
Perl6 NativeCall bindings to htslib
Moose-based Bio::Root bridge classes (testing for BioPerl)
Temp repo for Data Science Toolbox course
Perl 6 module management solution, -Ofun
Simple implementation of File::Temp for creating temporary files
Tools for bioinformatics
Tools for working with SAM/BAM data (development suspended until July)
Tools for working with second gen assemblies, fasta sequences, etc
The Leek group guide to data sharing
Perl XS bindings to klib's kseq.h
Reads issues from a redmine API XML and adds them to a github repository.
test bioperl issue migration
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
Small utilities for working with fastq sequence files.
General BioPerl modules for PacBio-related tools (EXPERIMENTAL)