You can clone with
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php_beautifier -r "*.php" -f "./" -o "./" -l "ArrayNested() DocBlock() EqualsAlign() IndentStyles(style=bsd)"
produces a file called ArrayNested...
changing argument order produces random results, sometimes only one file processes, most of the time it dies with
php_beautifier [error] Nothing on output!
I'm probably doing something wrong, but what it is i have no idea.
Merge pull request #1 from rdeutz/patch-1