@clinicalml

Sontag Lab

Machine learning algorithms and applications to health care.

  • HTML MIT Updated Jul 27, 2018
  • Scalable semi-supervised learning with deep variational autoencoders

    Jupyter Notebook 4 3 MIT Updated Jun 22, 2018
  • Python 1 2 Updated Jun 7, 2018
  • Applies and evaluates a variety of methods to complete a partially-observed data tensor, e.g. comprising gene expression profiles corresponding to various drugs, applied in various cellular contexts.

    R 6 1 Updated Apr 22, 2018
  • Counterfactual Regression

    Python 46 20 MIT Updated Jan 8, 2018
  • Concept extraction from MIMIC3 notes

    Python 3 3 Updated Nov 17, 2017
  • Code shared by the research community for the eICU Collaborative Research Database

    Jupyter Notebook 1 33 MIT Updated Oct 25, 2017
  • Miscellaneous tools for clinical ML

    Python 23 9 Updated Oct 21, 2017
  • A lightweight wrapper around theano for rapid-prototyping of models

    Python 3 6 MIT Updated Sep 7, 2017
  • Structured Inference Networks for Nonlinear State Space Models

    Jupyter Notebook 147 38 MIT Updated Aug 29, 2017
  • Python 2 4 MIT Updated Aug 28, 2017
  • A torch package for learning diagnosis models from temporal patient data.

    Lua 64 20 MIT Updated Aug 28, 2017
  • Deep Markov Models

    Jupyter Notebook 49 12 Updated Aug 10, 2017
  • 9 6 Updated Jul 31, 2017
  • A clean Bootstrap blog theme created by Start Bootstrap

    JavaScript 995 MIT Updated Dec 2, 2016
  • Python 2 1 Updated Oct 21, 2016
  • A conditional language model for MIMIC-III.

    Python 5 Updated Sep 19, 2016
  • Python 13 2 BSD-2-Clause Updated Apr 24, 2016
  • Deep Generative Model (Torch)

    Lua 9 3 MIT Updated Apr 19, 2016
  • Methods to estimate noise rates of classifiers

    Python 1 Updated Apr 5, 2016
  • Code for AMIA CRI 2016 paper "Learning Low-Dimensional Representations of Medical Concepts" (http://cs.nyu.edu/~dsontag/papers/ChoiChiuSontag_AMIA_CRI16.pdf)

    Python 98 30 Updated Feb 20, 2016
  • Barrier Frank-Wolfe for Marginal Inference

    C++ 2 1 Apache-2.0 Updated Nov 30, 2015
  • Continuous-time Markov model with discrete observations

    Python 5 16 MIT Updated Oct 31, 2015
  • Python 9 6 Updated Sep 3, 2013
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