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Software for Java provided by the Connectivity Map, Broad Institute of MIT and Harvard. More information on our website


BSD 3-Clause License


Data format tools

Source code: src/cmap/io/

  • Class to store a GCTX data set.
  • Class to read a GCTX file.
  • Class to read and store .lxb files.


Working with GCTx files

Demonstrates how to read and write GCTx files. Compile the demo by running sh, then execute by running the runExample*.sh file that matches your OS.