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Voxelwise thresh table (1st set of updates) #3

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merged 20 commits into from Nov 18, 2016

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cmaumet commented Nov 18, 2016

This PR updates FSL to provide tables listing clusters and peaks for voxel-wise thresholds.

Changes are as follows:

infer.cc

  • Computes log(p) for GRF-corrected or uncorrected voxelwise thresholds (by overloading the () operator: Infer::operator()(float z)).

cluster{.cc, .h}

  • new options to compute corrected (--voxthresh) and uncorrected (--voxuncthresh) voxel-wise thresholds.
  • All calls to infer updated to deal with voxel-wise thresholds.
  • Examples of usage: README.md

featlib.tcl

  • Add call to cluster for voxel-wise thresholds.
  • Link activation image to HTML page listing clusters and peaks for voxel-wise thresholds.
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cmaumet commented Nov 18, 2016

This is the first set of updates sent to FSL development team. This was integrated as part of FSL development version.

@cmaumet cmaumet merged commit 545b2e9 into master Nov 18, 2016

@cmaumet cmaumet deleted the voxelwise_thresh_table_1st_set_of_updates branch Nov 18, 2016

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