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GMOD/jbrowse-components Public
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
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awesome-genome-visualization Public
A list of interesting genome browser or genome-browser-like implementations
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3,286 contributions in the last year
Activity overview
Contributed to
GMOD/jbrowse-components,
cmdcolin/cmdcolin.github.io,
cmdcolin/awesome-genome-visualization
and 106 other
repositories
Contribution activity
May 2022
Created 174 commits in 12 repositories
Created 3 repositories
- cmdcolin/homebrew-bio Ruby
- cmdcolin/ixxer JavaScript
- cmdcolin/paper2022 JavaScript
Created a pull request in GMOD/jbrowse-components that received 5 comments
Fix "Open" button on LGV ImportForm
In the LGV ImportForm, if you type in a string e.g. 1:1-100 into the RefNameAutocomplete and hit "Open" the ImportForm fails to navigate. This was …
+1,339
−1,429
•
5
comments
Opened 19 other pull requests in 4 repositories
GMOD/jbrowse-components
12
merged
1
open
- Draw indels in modifications/methylation mode
- Fix link on yeast synteny demo and fix CIGAR rendering on dotplot
- Add v1.7.8 announcement
- Fix filter functionality on pileup tracks
- Fix crash displaying modifications called on softclipped regions of reads
- Add more visible pileup mismatches when zoomed out
- Avoid performing a text index search if input looks like a locstring
- Fix read vs ref not finding primary alignment on certain CRAM files
- Fix viewing soft/hardclip indicator in some regions
- Upgrade to MUI v5
- Optimization for SNPCoverageAdapter and CRAM parsing
- Small doc updates
- Avoid stalling on undefined assemblyName during ref name renaming
GMOD/cram-js
3
merged
cmdcolin/jb2profile
2
merged
brewsci/homebrew-bio
1
open
Reviewed 1 pull request in 1 repository
GMOD/jbrowse-components
1 pull request
Created an issue in GMOD/jbrowse-components that received 2 comments
Using add track widget on same file twice does not perform the text index the second time on desktop
Use jbrowse desktop Add gff track, index names Delete that gff track Add same gff track again, index names The jobs list does not open, the names …
2
comments
Opened 5 other issues in 2 repositories
Started 2 discussions in 2 repositories
GMOD/jbrowse-components
GMOD/jbrowse-components
electron-userland/electron-builder
electron-userland/electron-builder
Answered 1 discussion in 1 repository
GMOD/jbrowse-components
GMOD/jbrowse-components