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awesome-genome-visualization

A list of interesting genome visualizers, genome browsers, or genome-browser-like implementations

See the new companion website here https://cmdcolin.github.io/awesome-genome-visualization/

Follow the Twitter account here too :) https://twitter.com/awesomegenomev1

Note that the organization on the GitHub README here is a best effort categorization using the first tag applied to each tool, but tools can have multiple tags too. See the website to see all tags applied to tools

The general focus here is on tools that plot things in genomic or sequence coordinate space

Note: This list runs the gammut from bespoke and simple to more general-purpose and complex tools. Some are historical, or may be for more visual inspiration only

I also encourage you to make your own visualization, things like R make this so much easier! But also consider making your visualization code re-usable for the wider community! And feel free to send PRs for more tools!

General

Commercial

MSA

Logo

CNV

Static

Gene fusion

Alignment viewer

Comparative

Single cell

GWAS

Dotplot

Gene structure

Microbiology

Graph

SV

Text based

Circular

Synthetic biology

Special-purpose

Expression

Population

Assembly QC

Exotic

Epigenomics

Ideogram

Mobile

Pangenome

Protein

Heatmap

Repeats

Historical

QC

Methylation

Phylogenetics

Long reads

Assembly

Coverage

Splicing

Hi-C

Deadlink

BLAST

Academic license

Local ancestry

Variation

Other lists

Send in PRs for more stuff!

License

This README.md and TOOLS.json are CC0 https://creativecommons.org/publicdomain/zero/1.0/

The website code is MIT