cmdoret, 2020
This repository contains all the different latex files required to compile my PhD thesis. This is based on the cleanthesis style, hosted at: https://github.com/derric/cleanthesis
To compile the thesis into a pdf file, simply run make.
The precompiled thesis in PDF format is available from the releases page. Each tagged commit (release) was automatically compiled into a pdf using github workflows.
The structure of the latex files is as follows:
.
├── my-thesis.tex # Master .tex file for the thesis which gets compiled.
├── FrontBackMatter/ # Files related to front page, glossary etc.
├── assets/ # External PDF files to include as appendices.
├── Parts/ # Largest unit of separation (Intro, results, discussion, ...)
│ ├── Appendix.tex # Special part rendered at the end of the thesis.
│ ├── PartXX/ # Contains all files required by partXX.tex.
│ │ ├── ChapterXX.tex # Subdivision of parts, where most of the text is written.
│ │ └── gfx/ # Figure and graphical files used in the part.
│ └── PartXX.tex # Master file for the part, with a short introduction and chapter imports.
└── Publications/ # PDF files of publications included in the thesis.
Code and analyses associated with this thesis' results are available on the following repositories:
- Part II, Chapter 1:
- Part II, Chapter 2:
- Part II, Chapter 3:
The final version of this thesis was officially published on the french open archive repository HAL: https://hal.archives-ouvertes.fr/tel-03679023 It can be cited as follows:
Cyril Matthey-Doret. Exploring the genomic complexity of bacterial infection in 3D. Genomics [q-bio.GN]. Sorbonne Université, 2021. English. ⟨NNT : 2021SORUS346⟩. ⟨tel-03679023⟩