The main script to run the analysis is pcr_test_trace.R. Set a name for your results in results_name and then run the rest of the script. Your results will be returned as a list of data frames for each scenario you have run (defined in parameters.R) and saved as a .fst in /results/"results_name".
Figures in the main text can be generated by running relative_results.R , and supplementary figures can be generated by running absolute_results.R